LXL04_025041 | RubberDandelionOmics

Gene overview

LXL04_025041

Reference: OH-1004 Chr: Chr05 Coordinates: 104480717-104484053 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1131 bp · LXL04_025041|LXL04_025041|OH1004|cDNA

AtgtcggaccgagtccgtggtccgagtccgtggtccactatcaaacgcacagactccggaccgagtccgtggtccgagtccgagtcTGTGGTCCGACGTGcaatcaaacagcccctaagaCAAACAGAATGTGACACGTGTATAATAAAAGGATTAGAAAGATGGTACGTGAGACTCTCTCCTTTCTTCAATCGTTCATCTGCAATACCGAAATCAGGAGTGGAAGAGTTTCGATTCTTCAACACGGAACAGAAGGGCGA...

CDS

Download CDS FASTA

1131 bp · LXL04_025041|LXL04_025041|OH1004|CDS

ATGTCGGACCGAGTCCGTGGTCCGAGTCCGTGGTCCACTATCAAACGCACAGACTCCGGACCGAGTCCGTGGTCCGAGTCCGAGTCTGTGGTCCGACGTGCAATCAAACAGCCCCTAAGACAAACAGAATGTGACACGTGTATAATAAAAGGATTAGAAAGATGGTACGTGAGACTCTCTCCTTTCTTCAATCGTTCATCTGCAATACCGAAATCAGGAGTGGAAGAGTTTCGATTCTTCAACACGGAACAGAAGGGCGA...

Protein

Download Protein FASTA

376 aa · LXL04_025041|LXL04_025041|OH1004|PROTEIN

MSDRVRGPSPWSTIKRTDSGPSPWSESESVVRRAIKQPLRQTECDTCIIKGLERWYVRLSPFFNRSSAIPKSGVEEFRFFNTEQKGEHNPIISREGTNPNMRTQSGSSNRNTFSPSFLQSLQSRTQFTNHLIVSLTASGNLDGNKEKNSLGSKGVSNFMISRLFTTPLLLCSFISLSLFSSASLIDSAAGSRRLLRAITTGGDQPDFAVDLNVTNFDEVLRDTPAPFAIVEFFAHWCPACRNYKPQYEKVARLFNGANAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025041`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025041

Location Chr05:104480717-104484053 (+)

Description Similar to QSOX2: Sulfhydryl oxidase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g01270`	Catalyzes the oxidation of sulfhydryl groups in peptide and protein thiols to disulfides with the reduction of oxygen to hydrogen peroxide.	No verified direct reference in this release
`At1g15020`	Sulfhydryl oxidase involved in the regulation of cation homeostasis.	An Arabidopsis quiescin-sulfhydryl oxidase regulates cation homeostasis at the root symplast-xylem interface.2007 · DOI: 10.1038/sj.emboj.7601757

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0552500`	Catalyzes the oxidation of sulfhydryl groups in peptide and protein thiols to disulfides with the reduction of oxygen to hydrogen peroxide.	No verified direct reference in this release
`Os05g0156300`	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025041 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0043157 response to cation stress Biological Process

GO:0043268 positive regulation of potassium ion transport Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005788 endoplasmic reticulum lumen Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT1G15020

ath:AT2G01270

ddi:DDB_G0276141

dosa:Os05g0156300

dosa:Os05g0552500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.230

Rank 1 · LXL04_025041 · OH-1004

Plastid0.212

Rank 2 · LXL04_025041 · OH-1004

Golgi apparatus0.159

Rank 3 · LXL04_025041 · OH-1004

Cytoplasm0.123

Rank 4 · LXL04_025041 · OH-1004

Nucleus0.112

Rank 5 · LXL04_025041 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00085.27Thioredoxin210-314 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025041	`PF00085.27`	Thioredoxin	210	314	1e-12	48.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZU40`	Arabidopsis thaliana	Sulfhydryl oxidase 2	62.802%	Swiss-Prot	moderate database homology
`Q8W4J3`	Arabidopsis thaliana	Sulfhydryl oxidase 1	62.234%	Swiss-Prot	weak database homology
`Q6AUC6`	Oryza sativa subsp. japonica	Sulfhydryl oxidase 1	60.795%	Swiss-Prot	weak database homology
`Q75M08`	Oryza sativa subsp. japonica	Protein disulfide isomerase-like 2-1	29.323%	Swiss-Prot	weak database homology

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