LXL04_024603 | RubberDandelionOmics

Gene overview

LXL04_024603

Reference: OH-1004 Chr: Chr05 Coordinates: 94944526-94948147 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1126 bp · LXL04_024603|LXL04_024603|OH1004|cDNA

ATGGATGTTGAGAAAGTTTTCCACATGAATGGCGGACTTGGTGCAAATAGCTATGCACAAAATTCATCTCTTCAGAAAAAGGCTTCAGATATGGTAAAACACATAACCCTCAAAACCCTAGAAGAAACCTACATCTCCACCACACCAACAAGTCTCGGCATAGCCGATCTCGGCTGTTCCTCCGGTCAAAACACACTATCAACCATACGAGAAATGGTGGAAGCCATCGACCAAATCGCCGGTAAACTCCCCAAAACCCC...

CDS

Download CDS FASTA

1101 bp · LXL04_024603|LXL04_024603|OH1004|CDS

ATGGATGTTGAGAAAGTTTTCCACATGAATGGCGGACTTGGTGCAAATAGCTATGCACAAAATTCATCTCTTCAGAAAAAGGCTTCAGATATGGTAAAACACATAACCCTCAAAACCCTAGAAGAAACCTACATCTCCACCACACCAACAAGTCTCGGCATAGCCGATCTCGGCTGTTCCTCCGGTCAAAACACACTATCAACCATACGAGAAATGGTGGAAGCCATCGACCAAATCGCCGGTAAACTCCCCAAAACCCC...

Protein

Download Protein FASTA

366 aa · LXL04_024603|LXL04_024603|OH1004|PROTEIN

MDVEKVFHMNGGLGANSYAQNSSLQKKASDMVKHITLKTLEETYISTTPTSLGIADLGCSSGQNTLSTIREMVEAIDQIAGKLPKTPPPEFRIHLNDLPTNDFNAVFKILPDFHQSLNNQRGNRSFKHDSSVYIAGYPGTFYGRLFPDKCLHFIYSSYGLHWLSKVPPGIYDNNGKSINKDSLYISKSSSPQVSKAYFDQFQEDFSLFLRSRSKEVLTGGRMVLILLGRRDRNHVDRGNSFLWELLARSFATLVFQGEVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024603`
TK1151 ID	TkAUNG016300
OH-1004 ID	LXL04_024603
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	98.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024603

Location Chr05:94944526-94948147 (-)

Description Similar to SAMT: Salicylate carboxymethyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36470`	Methyltransferase involved in the biosynthesis of strigolactone natural products, bioactive compounds promoting plant fitness and soil microbe interactions, but preventing shoot branching.	Specific methylation of (11R)-carlactonoic acid by an Arabidopsis SABATH methyltransferase.2021 · DOI: 10.1007/s00425-021-03738-6

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024603 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0032259 methylation Biological Process

GO:1901601 strigolactone biosynthetic process Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0008168 methyltransferase activity Molecular Function

GO:0008757 S-adenosylmethionine-dependent methyltransferase activity Molecular Function

GO:0030795 methyl jasmonate methylesterase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ag:AAF00108

ath:AT4G36470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.833

Rank 1 · LXL04_024603 · OH-1004

Nucleus0.326

Rank 2 · LXL04_024603 · OH-1004

Endoplasmic reticulum0.057

Rank 3 · LXL04_024603 · OH-1004

Plastid0.056

Rank 4 · LXL04_024603 · OH-1004

Cell membrane0.034

Rank 5 · LXL04_024603 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03492.23Methyltransf_74-365 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024603	`PF03492.23`	Methyltransf_7	4	365	8e-132	440.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23234`	Arabidopsis thaliana	Carlactonoate CLA methyltransferase	59.892%	Swiss-Prot	strong database homology

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