Gene Card
Gene overview
cDNA / CDS / Protein Sequences
927 bp · LXL04_023465|LXL04_023465|OH1004|cDNA
ATGATGCGATCGCCTTGCTGCGAAAAGGATCACACCAACAAAGGCGCATGGACTAAAGAAGAAGACGAGCGTCTGGTATCCTACATCAACGCTCACGGCGAAAGCTCCTCGAGATCTCTACCTAAATCCGCCGGTTTAAATCGCTGCGGCAAAAGTTGTAGGCTCCGATGGATTAATTACCTCCGGCCTGATCTTAAATGCGGCAATTTCACCCCACAAGAAGATCAACTCATAGTTAGCCTTCATGCAGTTCTCGGCAA...
927 bp · LXL04_023465|LXL04_023465|OH1004|CDS
ATGATGCGATCGCCTTGCTGCGAAAAGGATCACACCAACAAAGGCGCATGGACTAAAGAAGAAGACGAGCGTCTGGTATCCTACATCAACGCTCACGGCGAAAGCTCCTCGAGATCTCTACCTAAATCCGCCGGTTTAAATCGCTGCGGCAAAAGTTGTAGGCTCCGATGGATTAATTACCTCCGGCCTGATCTTAAATGCGGCAATTTCACCCCACAAGAAGATCAACTCATAGTTAGCCTTCATGCAGTTCTCGGCAA...
Protein
Download Protein FASTA308 aa · LXL04_023465|LXL04_023465|OH1004|PROTEIN
MMRSPCCEKDHTNKGAWTKEEDERLVSYINAHGESSSRSLPKSAGLNRCGKSCRLRWINYLRPDLKCGNFTPQEDQLIVSLHAVLGNKWSMIASRLPGFMPWITIEQLLRFGTSSAQVFVQFFLTGSYYLAARLSSLVGTEIGVFFGVAALGSGLLKETVTDCFKRTRLAIDPCDHPNSPRTTKDRKITTRSSPPPTAARATVAGGGDDDRKTIPKQVLISNKIELIWKLTGMKASAKELEMDKVLGDVLAGFHPTATVG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023465 |
|---|---|
| TK1151 ID | TkA06G324590 |
| OH-1004 ID | LXL04_023465 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 76.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023465 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:42857856-42862912 (-) | |||||||||
| Description | Similar to MYB32: Transcription factor MYB32 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009611 response to wounding Biological Process GO:0009737 response to abscisic acid Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0010224 response to UV-B Biological Process GO:0010597 green leaf volatile biosynthetic process Biological Process GO:0045892 negative regulation of DNA-templated transcription Biological Process GO:1901141 regulation of lignin biosynthetic process Biological Process GO:1903086 negative regulation of sinapate ester biosynthetic process Biological Process GO:2000762 regulation of phenylpropanoid metabolic process Biological Process GO:0005634 nucleus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT4G34990 ath:AT4G38620 zma:100037768 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00249.38Myb_DNA-binding14-61 aaPF13921.13Myb_DNA-bind_617-76 aaPF00249.38Myb_DNA-binding68-98 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023465 | PF00249.38 | Myb_DNA-binding | 14 | 61 | 4e-23 | 82.0 |
| LXL04_023465 | PF13921.13 | Myb_DNA-bind_6 | 17 | 76 | 5.2e-12 | 46.5 |
| LXL04_023465 | PF00249.38 | Myb_DNA-binding | 68 | 98 | 4e-23 | 82.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.