Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1755 bp · LXL04_022792|LXL04_022792|OH1004|cDNA
ATGGCCTCTGCTGCAGTAAGACGATTGTTTATCATCTTGACTTTGCTTCCTGTAATCACGCATTCTATCCCTTTTGTTGTCTTTCATGGTGTTGCAGATAGTTGCACCAAGAAAGGAGTCAAACATTTCACCGATCTCTTAAGCGAGTGGTCAAACTCTACGGGATATTGCATAGAAATTGGAAATGGAGTGTGGGATTCTTGGTTTATGCCTTTTGACCAACAGACAGACATTGCATGTGAAACGGTGAAGAGTATGAG...
1755 bp · LXL04_022792|LXL04_022792|OH1004|CDS
ATGGCCTCTGCTGCAGTAAGACGATTGTTTATCATCTTGACTTTGCTTCCTGTAATCACGCATTCTATCCCTTTTGTTGTCTTTCATGGTGTTGCAGATAGTTGCACCAAGAAAGGAGTCAAACATTTCACCGATCTCTTAAGCGAGTGGTCAAACTCTACGGGATATTGCATAGAAATTGGAAATGGAGTGTGGGATTCTTGGTTTATGCCTTTTGACCAACAGACAGACATTGCATGTGAAACGGTGAAGAGTATGAG...
Protein
Download Protein FASTA584 aa · LXL04_022792|LXL04_022792|OH1004|PROTEIN
MASAAVRRLFIILTLLPVITHSIPFVVFHGVADSCTKKGVKHFTDLLSEWSNSTGYCIEIGNGVWDSWFMPFDQQTDIACETVKSMSELSEGYNIVGLSQGNIVGRGVLEFCDGAPPVKNFISVAGPHAGEASMPFCGSGLMCVVFDSLMKLAIYSETLQEHLAPSNYIKIPTDLDEYREGCKFLPKLNNEFEKNATYKERFSSLQNLVLIMGDKDSVLVPKETSWFGYFPDGAWEPILPAQETRLYIEDWIGLRTLDEA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022792 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022792 |
|---|---|
| Location | Chr05:9427081-9440889 (-) |
| Description | Similar to ppt-1: Palmitoyl-protein thioesterase 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0002084 protein depalmitoylation Biological Process GO:0006897 endocytosis Biological Process GO:0006898 receptor-mediated endocytosis Biological Process GO:0006907 pinocytosis Biological Process GO:0007005 mitochondrion organization Biological Process GO:0007040 lysosome organization Biological Process GO:0007042 lysosomal lumen acidification Biological Process GO:0009791 post-embryonic development Biological Process GO:0015031 protein transport Biological Process GO:0016042 lipid catabolic process Biological Process GO:0030163 protein catabolic process Biological Process GO:0030308 negative regulation of cell growth Biological Process |
| KEGG gene cross-reference | cel:CELE_F44C4.5 ddi:DDB_G0292862 rno:29411 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02089.22Palm_thioest24-272 aaPF02089.22Palm_thioest325-529 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022792 | PF02089.22 | Palm_thioest | 24 | 272 | 2.6e-136 | 454.0 |
| LXL04_022792 | PF02089.22 | Palm_thioest | 325 | 529 | 2.6e-136 | 454.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.