LXL04_022751 | RubberDandelionOmics

Gene overview

LXL04_022751

Reference: OH-1004 Chr: Chr05 Coordinates: 7661119-7661848 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

648 bp · LXL04_022751|LXL04_022751|OH1004|cDNA

ATGGAAATCCAGCTGATCCGTTCTCACCCATTTCCTTTGAAACAACCACCTATCTCCTCCCATCCTCACCAGCGTACAACCACCGTCAAGGTGCATGGAGTCTCCGGCACCCCACAAAAGCTAATACAGTCCGGCACTGTGGTGGCCATTTTCCCAAAAGACGCAGCGGCAGCCATTAACGACGGTGGATACAAACTCCTGGACATCAGGCCAGAATGGGAGAGAGAGAAGGCACGTGTGTCAGGATCAATGCACGTGCC...

CDS

Download CDS FASTA

648 bp · LXL04_022751|LXL04_022751|OH1004|CDS

ATGGAAATCCAGCTGATCCGTTCTCACCCATTTCCTTTGAAACAACCACCTATCTCCTCCCATCCTCACCAGCGTACAACCACCGTCAAGGTGCATGGAGTCTCCGGCACCCCACAAAAGCTAATACAGTCCGGCACTGTGGTGGCCATTTTCCCAAAAGACGCAGCGGCAGCCATTAACGACGGTGGATACAAACTCCTGGACATCAGGCCAGAATGGGAGAGAGAGAAGGCACGTGTGTCAGGATCAATGCACGTGCC...

Protein

Download Protein FASTA

215 aa · LXL04_022751|LXL04_022751|OH1004|PROTEIN

MEIQLIRSHPFPLKQPPISSHPHQRTTTVKVHGVSGTPQKLIQSGTVVAIFPKDAAAAINDGGYKLLDIRPEWEREKARVSGSMHVPLFVQDMDNSPITLLKKWVHFGYIGLWTGQYFTEMNPNFVDQVEKMVPDKSTKVLVACGEGLRSMMATSRLYKNGYTNLGWLAGGFNRAVEGDFSEVEGPEKLQYATIGGASYFFLKLLFLLQAVGKNE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022751`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_022751

Location Chr05:7661119-7661848 (+)

Description Similar to STR10: Rhodanese-like domain-containing protein 10

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g08920`	Rhodanese-like domain-containing protein 10.	No verified direct reference in this release
`At4g24750`	Rhodanese-like domain-containing protein 11, chloroplastic.	No verified direct reference in this release
`At2g42220`	Rhodanese-like domain-containing protein 9, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022751 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT2G42220

ath:AT3G08920

ath:AT4G24750

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.954

Rank 1 · LXL04_022751 · OH-1004

Mitochondrion0.058

Rank 2 · LXL04_022751 · OH-1004

Nucleus0.020

Rank 3 · LXL04_022751 · OH-1004

Cytoplasm0.017

Rank 4 · LXL04_022751 · OH-1004

Cell membrane0.011

Rank 5 · LXL04_022751 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00581.26Rhodanese52-173 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022751	`PF00581.26`	Rhodanese	52	173	2e-11	44.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SR92`	Arabidopsis thaliana	Rhodanese-like domain-containing protein 10	62.353%	Swiss-Prot	strong database homology
`Q0WWT7`	Arabidopsis thaliana	Rhodanese-like domain-containing protein 11, chloroplastic	39.752%	Swiss-Prot	moderate database homology
`O48529`	Arabidopsis thaliana	Rhodanese-like domain-containing protein 9, chloroplastic	36.111%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card