LXL04_019778 | RubberDandelionOmics

Gene overview

LXL04_019778

Reference: OH-1004 Chr: Chr04 Coordinates: 39946033-39949186 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

717 bp · LXL04_019778|LXL04_019778|OH1004|cDNA

ATGTATGAGGAATCCATGAAGCCTTCTCATTCTATGGATTCAGAAACCTCTCAAGCTCTTCTTGATGCTAGCAGGATGGCCCTTTTCAAATCTGCCACTAATCACCAAGGACAACTGATGCAAGGAAACTCTGCAAATATGTCTGCAAGTTTACAGCAAATTCAAGGGAGACCCCAGTTGAATACAGATTTCGAGTCTGAGAGAAAAATTCAAATTAGGCCTGGCAAAAAGGATTGCCATAAGGGCCAGCAAAGGTATGG...

CDS

Download CDS FASTA

717 bp · LXL04_019778|LXL04_019778|OH1004|CDS

ATGTATGAGGAATCCATGAAGCCTTCTCATTCTATGGATTCAGAAACCTCTCAAGCTCTTCTTGATGCTAGCAGGATGGCCCTTTTCAAATCTGCCACTAATCACCAAGGACAACTGATGCAAGGAAACTCTGCAAATATGTCTGCAAGTTTACAGCAAATTCAAGGGAGACCCCAGTTGAATACAGATTTCGAGTCTGAGAGAAAAATTCAAATTAGGCCTGGCAAAAAGGATTGCCATAAGGGCCAGCAAAGGTATGG...

Protein

Download Protein FASTA

238 aa · LXL04_019778|LXL04_019778|OH1004|PROTEIN

MYEESMKPSHSMDSETSQALLDASRMALFKSATNHQGQLMQGNSANMSASLQQIQGRPQLNTDFESERKIQIRPGKKDCHKGQQRYGRSSHKRILFDMDVILMVSGGTAPDENSCTQYLQGCEELWTKIEKLAKRVYRNHKTETDTKTAFTAIALTVPIFMNRILFVTSSSSAIQTLASTIALAADYSNAPPFLAITMCDCWRECSIGTVAVGKRRSSDDEVTLGCSSLATCSEACGL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019778`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019778

Location Chr04:39946033-39949186 (-)

Description Similar to LUH: Transcriptional corepressor LEUNIG_HOMOLOG

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g32700`	May act as a transcriptional corepressor-complex subunit that represses abiotic stress-related genes.	The Arabidopsis transcription factor LUH/MUM1 is required for extrusion of seed coat mucilage.2011 · DOI: 10.1104/pp.111.172023

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019778 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001666 response to hypoxia Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006974 DNA damage response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009611 response to wounding Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0009624 response to nematode Biological Process

GO:0009733 response to auxin Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

KEGG gene cross-reference

ath:AT2G32700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.394

Rank 1 · LXL04_019778 · OH-1004

Cytoplasm0.366

Rank 2 · LXL04_019778 · OH-1004

Mitochondrion0.193

Rank 3 · LXL04_019778 · OH-1004

Cell membrane0.123

Rank 4 · LXL04_019778 · OH-1004

Endoplasmic reticulum0.066

Rank 5 · LXL04_019778 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O48847`	Arabidopsis thaliana	Transcriptional corepressor LEUNIG_HOMOLOG	56.000%	Swiss-Prot	weak database homology

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