Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1029 bp · LXL04_018751|LXL04_018751|OH1004|cDNA
ATGGAAAAGCTACTTTCAAGCTGGTCTTCCGCCGCTGTATCCTTGCCGGAAAACTATGTATTTCCAGTCCATTCAAGACCAGGAGATACGACGGTGCCCTTTTGCAAAACTCTCCCCATGATCGATCTCAAGGCTGCACTTGCTTATGGTCGACACAATGCAATTCAACAAGTTCTTGAAGCTTGTCAAGATTTTGGAATTTTTCAGGTTATCAACCATGGAGTTAATGATGATCTAGTGATCGACACGATGAAAGTTGT...
1029 bp · LXL04_018751|LXL04_018751|OH1004|CDS
ATGGAAAAGCTACTTTCAAGCTGGTCTTCCGCCGCTGTATCCTTGCCGGAAAACTATGTATTTCCAGTCCATTCAAGACCAGGAGATACGACGGTGCCCTTTTGCAAAACTCTCCCCATGATCGATCTCAAGGCTGCACTTGCTTATGGTCGACACAATGCAATTCAACAAGTTCTTGAAGCTTGTCAAGATTTTGGAATTTTTCAGGTTATCAACCATGGAGTTAATGATGATCTAGTGATCGACACGATGAAAGTTGT...
Protein
Download Protein FASTA342 aa · LXL04_018751|LXL04_018751|OH1004|PROTEIN
MEKLLSSWSSAAVSLPENYVFPVHSRPGDTTVPFCKTLPMIDLKAALAYGRHNAIQQVLEACQDFGIFQVINHGVNDDLVIDTMKVVKEFFDMPNEDKVDVYSEDPNNKCRLYTSTYDYENEKTHLWRDNLRHHCYPIHDFIHLWPKKPTRYRDVVMKYSLQVADLSSRILELICDGLGLGPMYFGEGLTGVQLFSANHYPPCPSPDLALGLPKHCDANLITFLQQDDIYGLQLYRNGEWLGIEPIPNAFVVILGHQSQV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018751 |
|---|---|
| TK1151 ID | TkA08G081060 |
| OH-1004 ID | LXL04_018751 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018751 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:17637483-17639934 (-) | |||||||||
| Description | Similar to H6H: Hyoscyamine 6-dioxygenase | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0002229 defense response to oomycetes Biological Process GO:0002238 response to molecule of fungal origin Biological Process GO:0002239 response to oomycetes Biological Process GO:0009617 response to bacterium Biological Process GO:0009620 response to fungus Biological Process GO:0009751 response to salicylic acid Biological Process GO:0009805 coumarin biosynthetic process Biological Process GO:0009813 flavonoid biosynthetic process Biological Process GO:0010041 response to iron(III) ion Biological Process GO:0010150 leaf senescence Biological Process GO:0042742 defense response to bacterium Biological Process GO:0046244 salicylic acid catabolic process Biological Process | |||||||||
| KEGG gene cross-reference | ag:BAA05630 ag:BAA75493 ag:BAA78340 ath:AT4G10490 ath:AT5G24530 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14226.13DIOX_N38-147 aaPF03171.272OG-FeII_Oxy193-290 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018751 | PF14226.13 | DIOX_N | 38 | 147 | 1.3e-21 | 78.1 |
| LXL04_018751 | PF03171.27 | 2OG-FeII_Oxy | 193 | 290 | 1.4e-27 | 96.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.