LXL04_018381 | RubberDandelionOmics

Gene overview

LXL04_018381

Reference: OH-1004 Chr: Chr04 Coordinates: 12294291-12298661 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2283 bp · LXL04_018381|LXL04_018381|OH1004|cDNA

ATGTTTAATCTCGTCGGCAGAAACTTGACAATTTCTGTATTCAAAACATCATCGGTTCATAGATTATTACCTCGCACATCATATTCGTCACAAGCAGCATCAGATAACTCAATCACAGTTTCCTACCTCATAAACTCATGCGGATTCCCTCCCGACAAGGTGATTTCAGCTTCCAAATCCTTAAACATCACCACCCCAGATCGAGCAGACTCTGTGATATCATTTTTCAAGAATCAAGGATTCACACAAACCCAAATCTC...

CDS

Download CDS FASTA

2283 bp · LXL04_018381|LXL04_018381|OH1004|CDS

ATGTTTAATCTCGTCGGCAGAAACTTGACAATTTCTGTATTCAAAACATCATCGGTTCATAGATTATTACCTCGCACATCATATTCGTCACAAGCAGCATCAGATAACTCAATCACAGTTTCCTACCTCATAAACTCATGCGGATTCCCTCCCGACAAGGTGATTTCAGCTTCCAAATCCTTAAACATCACCACCCCAGATCGAGCAGACTCTGTGATATCATTTTTCAAGAATCAAGGATTCACACAAACCCAAATCTC...

Protein

Download Protein FASTA

760 aa · LXL04_018381|LXL04_018381|OH1004|PROTEIN

MFNLVGRNLTISVFKTSSVHRLLPRTSYSSQAASDNSITVSYLINSCGFPPDKVISASKSLNITTPDRADSVISFFKNQGFTQTQISHLVRKFPMALEFNPQTHFLPKFEFLRSVGLSDSDIVKLLIARPKSLRTSLKNHIQPTFTLLTDLLQSNEKTLTAIRTCPWVLDRNFQSIVIPNMQTLRDIGFPGSKMLYVLTHHPRDISITTEQFKKAVEEAVKMGFDPLKSNFMLAVHTLRSISKSTLWKKMENYEKWGLSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018381`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018381

Location Chr04:12294291-12298661 (+)

Description Similar to MTERF8: Transcription termination factor MTERF8, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54180`	Transcription termination factor that is transcriptionally active in chloroplasts.	No verified direct reference in this release
`At5g55580`	Transcription termination factor required for processing and steady-state levels of plastid transcripts.	Mutations in the plant-conserved MTERF9 alter chloroplast gene expression, development and tolerance to abiotic stress in Arabidopsis thaliana.2015 · DOI: 10.1111/ppl.12307
`At4g38160`	Transcription termination factor essential for chloroplast development.	No verified direct reference in this release
`At2g03050`	Transcription termination factor required for plastid- specific rRNA accumulation and protein synthesis in plastids.	A mutation in the Arabidopsis mTERF-related plastid protein SOLDAT10 activates retrograde signaling and suppresses (1)O(2)-induced cell death.2009 · DOI: 10.1111/j.1365-313x.2009.03965.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018381 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006353 DNA-templated transcription termination Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006393 termination of mitochondrial transcription Biological Process

GO:0008033 tRNA processing Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010343 singlet oxygen-mediated programmed cell death Biological Process

GO:0015979 photosynthesis Biological Process

GO:0032502 developmental process Biological Process

GO:0048364 root development Biological Process

GO:0048367 shoot system development Biological Process

KEGG gene cross-reference

ath:AT2G03050

ath:AT4G38160

ath:AT5G54180

ath:AT5G55580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.610

Rank 1 · LXL04_018381 · OH-1004

Plastid0.282

Rank 2 · LXL04_018381 · OH-1004

Cytoplasm0.077

Rank 3 · LXL04_018381 · OH-1004

Nucleus0.033

Rank 4 · LXL04_018381 · OH-1004

Peroxisome0.012

Rank 5 · LXL04_018381 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02536.20mTERF73-221 aa

PF02536.20mTERF240-349 aa

PF02536.20mTERF459-667 aa

PF02536.20mTERF625-734 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018381	`PF02536.20`	mTERF	73	221	7.3e-63	213.1
LXL04_018381	`PF02536.20`	mTERF	240	349	7.3e-63	213.1
LXL04_018381	`PF02536.20`	mTERF	459	667	7.3e-63	213.1
LXL04_018381	`PF02536.20`	mTERF	625	734	7.3e-63	213.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FK23`	Arabidopsis thaliana	Transcription termination factor MTERF8, chloroplastic	19.565%	Swiss-Prot	weak database homology
`Q9FM80`	Arabidopsis thaliana	Transcription termination factor MTERF9, chloroplastic	29.323%	Swiss-Prot	weak database homology
`Q9SZL6`	Arabidopsis thaliana	Transcription termination factor MTERF6, chloroplastic/mitochondrial	24.699%	Swiss-Prot	weak database homology
`Q84X53`	Arabidopsis thaliana	Transcription termination factor MTEF1, chloroplastic	28.467%	Swiss-Prot	weak database homology

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