LXL04_017905 | RubberDandelionOmics

基因概览

LXL04_017905

当前版本: OH-1004 染色体: Chr04 坐标: 3296718-3301903 链方向: + 类型: protein_coding

cDNA / CDS / 蛋白序列

可用序列下载 CDS FASTA 蛋白 FASTA cDNA FASTA

cDNA

2943 bp · LXL04_017905|LXL04_017905|OH1004|cDNA

ATGGCGTCTTTGAGAATGATGGGGGTTCTGTCGTTTCTTCTGGTTTTTTCAAGCTTCTTCGTCCTCTTCGTTAACTCCGATGACGGGGGGACATTGTTGGAGATAAAAAAGTCGTTTAGAGATGTGAATAATGTGCTTTATGACTGGACTGCTTCACCTTCTTCCGACTACTGTTCATGGCGAGGTGTTTCTTGTGATAATGTCACCTTCAATGTCGTTGCCCTTAATCTTTCAGGCTTGAATCTTGATGGGGAACTGTC...

CDS

下载 CDS FASTA

2943 bp · LXL04_017905|LXL04_017905|OH1004|CDS

ATGGCGTCTTTGAGAATGATGGGGGTTCTGTCGTTTCTTCTGGTTTTTTCAAGCTTCTTCGTCCTCTTCGTTAACTCCGATGACGGGGGGACATTGTTGGAGATAAAAAAGTCGTTTAGAGATGTGAATAATGTGCTTTATGACTGGACTGCTTCACCTTCTTCCGACTACTGTTCATGGCGAGGTGTTTCTTGTGATAATGTCACCTTCAATGTCGTTGCCCTTAATCTTTCAGGCTTGAATCTTGATGGGGAACTGTC...

蛋白

下载蛋白 FASTA

980 aa · LXL04_017905|LXL04_017905|OH1004|PROTEIN

MASLRMMGVLSFLLVFSSFFVLFVNSDDGGTLLEIKKSFRDVNNVLYDWTASPSSDYCSWRGVSCDNVTFNVVALNLSGLNLDGELSPSIGELKGLLSIDLRANRLSGQIPDEIGDCSALTNLDLSFNMLTGDIPFSISKLKQLELLILKNNQLIGPIPSTLSQIPNLKILDLAQNRLNGEIPRLIYWNEVLQYLGLRSNNLVGEISPDVCQLTGLWYFDVRNNSLTGTIPSNIGNCTGFQVLDLSYNQLTGEIPFNIGF...

上下游序列下载

序列方向与下载说明

上游/下游最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

多版本 ID 对照

输入 ID	`LXL04_017905`
版本	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

查看完整 ID 对照表

SNP / Indel 变异与样本携带情况CRA009020 · OH-1004

展开后加载该基因的变异记录。

基因基本信息与功能注释

基因 ID LXL04_017905

位置 Chr04:3296718-3301903 (+)

描述 Similar to ERECTA: LRR receptor-like serine/threonine-protein kinase ERECTA

拟南芥 / 水稻参考基因与文献

下载当前基因文献

拟南芥

参考基因 ID	可能功能	对应论文 / DOI
`At2g26330`	可能作为受体激酶，与 ERL1 和 ERL2 共同调节地上部株型及气孔分布。	KNAT1 and ERECTA regulate inflorescence architecture in Arabidopsis.2002 · DOI: 10.1105/tpc.010391 Novel as1 and as2 defects in leaf adaxial-abaxial polarity reveal the requirement for ASYMMETRIC LEAVES1 and 2 and ERECTA functions in specifying leaf adaxial identity.2003 · DOI: 10.1242/dev.00622 ERECTA, an LRR receptor-like kinase protein controlling development pleiotropically affects resistance to bacterial wilt.2003 · DOI: 10.1046/j.1365-313x.2003.01877.x Synergistic interaction of three ERECTA-family receptor-like kinases controls Arabidopsis organ growth and flower development by promoting cell proliferation.2004 · DOI: 10.1242/dev.01028 ERECTA is required for protection against heat-stress in the AS1/ AS2 pathway to regulate adaxial-abaxial leaf polarity in Arabidopsis.2004 · DOI: 10.1007/s00425-004-1248-z ERECTA receptor-like kinase and heterotrimeric G protein from Arabidopsis are required for resistance to the necrotrophic fungus Plectosphaerella cucumerina.2005 · DOI: 10.1111/j.1365-313x.2005.02440.x The ERECTA gene regulates plant transpiration efficiency in Arabidopsis.2005 · DOI: 10.1038/nature03835 Pedicel development in Arabidopsis thaliana: contribution of vascular positioning and the role of the BREVIPEDICELLUS and ERECTA genes.2005 · DOI: 10.1016/j.ydbio.2005.06.011 Interaction of auxin and ERECTA in elaborating Arabidopsis inflorescence architecture revealed by the activation tagging of a new member of the YUCCA family putative flavin monooxygenases.2005 · DOI: 10.1104/pp.105.063495 ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048041 Haploinsufficiency after successive loss of signaling reveals a role for ERECTA-family genes in Arabidopsis ovule development.2007 · DOI: 10.1242/dev.004788 Genetics of microenvironmental canalization in Arabidopsis thaliana.2007 · DOI: 10.1073/pnas.0701936104 A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations.2009 · DOI: 10.1093/jxb/erp084 Polymorphic genes of major effect: consequences for variation, selection and evolution in Arabidopsis thaliana.2009 · DOI: 10.1534/genetics.108.097030 The ERECTA Receptor-Like Kinase Regulates Cell Wall-Mediated Resistance to Pathogens in Arabidopsis thaliana.2009 · DOI: 10.1094/mpmi-22-8-0953 Direct interaction of ligand-receptor pairs specifying stomatal patterning.2012 · DOI: 10.1101/gad.179895.111 Regulation of inflorescence architecture by intertissue layer ligand-receptor communication between endodermis and phloem.2012 · DOI: 10.1073/pnas.1117537109 Regulation of plant vascular stem cells by endodermis-derived EPFL-family peptide hormones and phloem-expressed ERECTA-family receptor kinases.2013 · DOI: 10.1093/jxb/ert196 A receptor-like protein acts as a specificity switch for the regulation of stomatal development.2017 · DOI: 10.1101/gad.297580.117 The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats.1996 · DOI: 10.1105/tpc.8.4.735
`At5g62230`	受体激酶，与 ER 和 ERL2 一起调节花序结构和器官形状以及气孔图案，包括密度和聚类。	Synergistic interaction of three ERECTA-family receptor-like kinases controls Arabidopsis organ growth and flower development by promoting cell proliferation.2004 · DOI: 10.1242/dev.01028 Haploinsufficiency after successive loss of signaling reveals a role for ERECTA-family genes in Arabidopsis ovule development.2007 · DOI: 10.1242/dev.004788 Direct interaction of ligand-receptor pairs specifying stomatal patterning.2012 · DOI: 10.1101/gad.179895.111 Regulation of plant vascular stem cells by endodermis-derived EPFL-family peptide hormones and phloem-expressed ERECTA-family receptor kinases.2013 · DOI: 10.1093/jxb/ert196 A receptor-like protein acts as a specificity switch for the regulation of stomatal development.2017 · DOI: 10.1101/gad.297580.117

水稻

参考基因 ID	可能功能	对应论文 / DOI
`Os06g0203800`	参与调节耐热性的受体激酶。	暂无已核实直接文献
`Os02g0777400`	可能参与细胞增殖和细胞生长调控的受体激酶。	暂无已核实直接文献
`Os06g0130100`	参与盐碱干旱应激反应的受体激酶。	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants.2010 · DOI: 10.1111/j.1365-313x.2010.04146.x

功能注释来源

查看注释来源

功能注释来源：OH1004 · LXL04_017905 · GCA_047496595.1_OSU_TarKok_2.0。

GO 注释（OH1004 来源）

GO:0001558 regulation of cell growth 生物过程

GO:0009553 embryo sac development 生物过程

GO:0009664 plant-type cell wall organization 生物过程

GO:0009944 polarity specification of adaxial/abaxial axis 生物过程

GO:0009965 leaf morphogenesis 生物过程

GO:0010087 phloem or xylem histogenesis 生物过程

GO:0010103 stomatal complex morphogenesis 生物过程

GO:0010148 transpiration 生物过程

GO:0010286 heat acclimation 生物过程

GO:0030155 regulation of cell adhesion 生物过程

GO:0042659 regulation of cell fate specification 生物过程

GO:0042742 defense response to bacterium 生物过程

KEGG 基因交叉引用

ath:AT2G26330

ath:AT5G62230

dosa:Os02g0777400

dosa:Os06g0130100

dosa:Os06g0203800

osa:4340000

osa:4340427

以下为同源蛋白关联的 KEGG 基因编号，不代表本基因已获得通路功能验证。

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基因表达

查看该基因在不同研究、组织与处理条件下的表达量。表达结果按研究与计量单位分别展示。

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数据来源与对应关系说明

表达数据来自公开转录组研究；参考版本、样本信息和表达单位见查询结果。跨参考版本的对应关系不唯一时，不自动选择表达记录；缺失值不视为表达量为零。

亚细胞定位 Top 5

以下为计算预测或同源注释，不能替代定位实验。

细胞膜0.864

排名 1 · LXL04_017905 · OH-1004

内质网0.083

排名 2 · LXL04_017905 · OH-1004

细胞质0.067

排名 3 · LXL04_017905 · OH-1004

细胞核0.046

排名 4 · LXL04_017905 · OH-1004

溶酶体／液泡0.027

排名 5 · LXL04_017905 · OH-1004

LocPro · 直接预测 · 计算预测，非定位实验结果

进入亚细胞定位查询

预测功能结构域

结构域结果来自 Pfam-A/HMMER；位置为对应蛋白序列上的氨基酸坐标。

PF08263.18LRRNT_226-66 aa

PF13855.13LRR_8121-178 aa

PF13855.13LRR_8192-250 aa

PF23598.2LRR_14266-389 aa

PF13855.13LRR_8312-369 aa

PF12799.14LRR_4312-346 aa

PF13855.13LRR_8376-417 aa

PF23598.2LRR_14378-524 aa

基因 ID	结构域编号	结构域名称	起始 aa	终止 aa	E 值	评分
LXL04_017905	`PF08263.18`	LRRNT_2	26	66	2e-11	44.7
LXL04_017905	`PF13855.13`	LRR_8	121	178	1e-39	134.8
LXL04_017905	`PF13855.13`	LRR_8	192	250	1e-39	134.8
LXL04_017905	`PF23598.2`	LRR_14	266	389	1.9e-27	96.6
LXL04_017905	`PF13855.13`	LRR_8	312	369	1e-39	134.8
LXL04_017905	`PF12799.14`	LRR_4	312	346	7.1e-29	99.9
LXL04_017905	`PF13855.13`	LRR_8	376	417	1e-39	134.8
LXL04_017905	`PF23598.2`	LRR_14	378	524	1.9e-27	96.6
LXL04_017905	`PF13855.13`	LRR_8	430	478	1e-39	134.8
LXL04_017905	`PF12799.14`	LRR_4	430	466	7.1e-29	99.9
LXL04_017905	`PF13855.13`	LRR_8	454	513	1e-39	134.8
LXL04_017905	`PF00069.32`	Pkinase	655	913	2.2e-43	149.3
LXL04_017905	`PF07714.24`	PK_Tyr_Ser-Thr	655	916	1.3e-39	136.7

拟南芥 / 水稻蛋白同源

仅展示拟南芥和水稻；Swiss-Prot 为人工审校条目，TrEMBL 为补充序列候选。同源相似性不等同于实验验证。

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蛋白	物种	描述	一致性	数据库	置信等级
`Q42371`	拟南芥	LRR receptor-like serine/threonine-protein kinase ERECTA	80.204%	Swiss-Prot	强数据库同源证据
`C0LGW6`	拟南芥	LRR receptor-like serine/threonine-protein kinase ERL1	64.682%	Swiss-Prot	强数据库同源证据
`Q69SP5`	水稻	LRR receptor-like serine/threonine-protein kinase ER1	76.071%	Swiss-Prot	强数据库同源证据
`I1Z695`	水稻	LRR receptor-like serine/threonine-protein kinase ER2	74.585%	Swiss-Prot	强数据库同源证据
`Q658G7`	水稻	LRR receptor-like serine/threonine-protein kinase SIK1	66.632%	Swiss-Prot	强数据库同源证据

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