LXL04_017403 | RubberDandelionOmics

Gene overview

LXL04_017403

Reference: OH-1004 Chr: Chr03 Coordinates: 148324946-148326265 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

912 bp · LXL04_017403|LXL04_017403|OH1004|cDNA

ATGAGTTCCTTCATCAATTTCAAGAACTATAAGCCGATGTGTGCAAATTCGCCGACTTTTGATGAATTGCAAAACACATGcagtggaaatgggaagaatTTAGGATCAAGGAACATGGATGAGTTTTTAAAGAATATCTGGACTCCCGAAGAGACTCAATCGATGACATCAAGCTCCAATTTGGGGATAATCGGAAATTTACAAAAGCAAGGATCTTTAACGATACCAAGAACAGTTAGCCAGAAAAAAGTGGATGAAGT...

CDS

Download CDS FASTA

912 bp · LXL04_017403|LXL04_017403|OH1004|CDS

ATGAGTTCCTTCATCAATTTCAAGAACTATAAGCCGATGTGTGCAAATTCGCCGACTTTTGATGAATTGCAAAACACATGCAGTGGAAATGGGAAGAATTTAGGATCAAGGAACATGGATGAGTTTTTAAAGAATATCTGGACTCCCGAAGAGACTCAATCGATGACATCAAGCTCCAATTTGGGGATAATCGGAAATTTACAAAAGCAAGGATCTTTAACGATACCAAGAACAGTTAGCCAGAAAAAAGTGGATGAAGT...

Protein

Download Protein FASTA

303 aa · LXL04_017403|LXL04_017403|OH1004|PROTEIN

MSSFINFKNYKPMCANSPTFDELQNTCSGNGKNLGSRNMDEFLKNIWTPEETQSMTSSSNLGIIGNLQKQGSLTIPRTVSQKKVDEVWRDLLKENGDVGLIKEPTLGEMTLEDFLHKSGAIAENDKTHVIQNQGFHQDSVFTDGKNDNLRKILPKKSDFDFRSSVNNDRISSRENGFSINGKIDHLLKTDYPSELYQNSKFDTSPSPSPSYGGGHGRKRSGTVEKVVERRQKRMIKNRESASRSRARKQAYILELEAEVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017403`
TK1151 ID	TkA02G045220
OH-1004 ID	LXL04_017403
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017403

Location Chr03:148324946-148326265 (-)

Description Similar to ABF1: ABSCISIC ACID-INSENSITIVE 5-like protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g49720`	Binds to the ABA-responsive element (ABRE).	No verified direct reference in this release
`At1g45249`	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction.	Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions.2000 · DOI: 10.1073/pnas.190309197 AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis.2005 · DOI: 10.1105/tpc.105.035659 Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis.2006 · DOI: 10.1007/s11103-005-2418-5
`At2g41070`	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0211200`	Transcription factor involved in abscisic acid (ABA) signaling pathway.	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes.2011 · DOI: 10.1104/pp.111.173427 Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice.2012 · DOI: 10.1104/pp.111.190389 Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts.2015 · DOI: 10.3389/fpls.2015.00614 MODD Mediates Deactivation and Degradation of OsbZIP46 to Negatively Regulate ABA Signaling and Drought Resistance in Rice.2016 · DOI: 10.1105/tpc.16.00171
`Os02g0766700`	Transcriptional activator that mediates abscisic acid (ABA) signaling.	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice.2008 · DOI: 10.1104/pp.108.128199 Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes.2016 · DOI: 10.1104/pp.16.00469 OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.2016 · DOI: 10.1016/j.devcel.2016.06.011

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017403 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0010115 regulation of abscisic acid biosynthetic process Biological Process

GO:0010255 glucose mediated signaling pathway Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0090332 stomatal closure Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G45249

ath:AT1G49720

ath:AT2G41070

dosa:Os02g0766700

dosa:Os06g0211200

osa:4340462

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973

Rank 1 · LXL04_017403 · OH-1004

Cytoplasm0.102

Rank 2 · LXL04_017403 · OH-1004

Cell membrane0.019

Rank 3 · LXL04_017403 · OH-1004

Endoplasmic reticulum0.010

Rank 4 · LXL04_017403 · OH-1004

Plastid0.008

Rank 5 · LXL04_017403 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00170.27bZIP_1229-279 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017403	`PF00170.27`	bZIP_1	229	279	1e-10	42.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M7Q5`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 4	40.327%	Swiss-Prot	moderate database homology
`Q9M7Q4`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 5	38.071%	Swiss-Prot	moderate database homology
`Q9C5Q2`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 3	35.907%	Swiss-Prot	moderate database homology
`Q69TW5`	Oryza sativa subsp. japonica	bZIP transcription factor 46	39.564%	Swiss-Prot	moderate database homology
`Q6Z312`	Oryza sativa subsp. japonica	bZIP transcription factor 23	38.304%	Swiss-Prot	moderate database homology

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