LXL04_017339 | RubberDandelionOmics

Gene overview

LXL04_017339

Reference: OH-1004 Chr: Chr03 Coordinates: 146882207-146884276 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1236 bp · LXL04_017339|LXL04_017339|OH1004|cDNA

ATGGCCCAATCGGAGCTTGAGATGACCAACTCATCGTCTGATGAAGAAGAAGTGTCGACGGAAGGTTCCGAGTCCGAATCGGAATCGGAATCGGAATCAGATGTGACACCTCCAGCTCAGCCGTCTTCCAGAAAAACCCAACCCATTGCACAATCATCGTCCGAAGAATCCGAATCCGACGATGATTCACTTCCAAAGAGTCCCGAAAAAGCCAATCCAACCATCAAACCTTTAGCTTCAAAGCCCATGGATGATGAACG...

CDS

Download CDS FASTA

1236 bp · LXL04_017339|LXL04_017339|OH1004|CDS

ATGGCCCAATCGGAGCTTGAGATGACCAACTCATCGTCTGATGAAGAAGAAGTGTCGACGGAAGGTTCCGAGTCCGAATCGGAATCGGAATCGGAATCAGATGTGACACCTCCAGCTCAGCCGTCTTCCAGAAAAACCCAACCCATTGCACAATCATCGTCCGAAGAATCCGAATCCGACGATGATTCACTTCCAAAGAGTCCCGAAAAAGCCAATCCAACCATCAAACCTTTAGCTTCAAAGCCCATGGATGATGAACG...

Protein

Download Protein FASTA

411 aa · LXL04_017339|LXL04_017339|OH1004|PROTEIN

MAQSELEMTNSSSDEEEVSTEGSESESESESESDVTPPAQPSSRKTQPIAQSSSEESESDDDSLPKSPEKANPTIKPLASKPMDDERSKKPKPQNPISRNSPPPTKPVNVKRKAAEVDDGGKKSKIAKKEVGAVSAPGPDNAGEKKPLFQRVWSEEDEIVLIKGMINYVDTKGKDPMTDVNDFHEFVKSSLNVDVNNAQMTAKIRRLKAKFVNNVGKIEQHGKVRSLSNPHESKMYELSEALWGSKNASIVSCTTKKANP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017339`
TK1151 ID	TkA02G049560
OH-1004 ID	LXL04_017339
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 86.618 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017339

Location Chr03:146882207-146884276 (-)

Description Similar to At4g00390: Probable transcription factor At4g00390

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00390`	Probable transcription factor At4g00390.	No verified direct reference in this release
`At4g25210`	Transcription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3'.	No verified direct reference in this release
`At1g11510`	Probable transcription factor At1g11510.	No verified direct reference in this release
`At1g61730`	Probable transcription factor At1g61730.	No verified direct reference in this release
`At2g01370`	Probable transcription factor At2g01370.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017339 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0016592 mediator complex Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT1G11510

ath:AT1G61730

ath:AT2G01370

ath:AT4G00390

ath:AT4G25210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981

Rank 1 · LXL04_017339 · OH-1004

Cytoplasm0.060

Rank 2 · LXL04_017339 · OH-1004

Cell membrane0.019

Rank 3 · LXL04_017339 · OH-1004

Endoplasmic reticulum0.014

Rank 4 · LXL04_017339 · OH-1004

Plastid0.009

Rank 5 · LXL04_017339 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04504.21GeBP-like_DBD149-244 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017339	`PF04504.21`	GeBP-like_DBD	149	244	4.3e-30	105.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23063`	Arabidopsis thaliana	Probable transcription factor At4g00390	29.299%	Swiss-Prot	weak database homology
`Q9SB42`	Arabidopsis thaliana	GLABROUS1 enhancer-binding protein-like	30.603%	Swiss-Prot	moderate database homology
`C0SUU6`	Arabidopsis thaliana	Probable transcription factor At1g11510	27.914%	Swiss-Prot	weak database homology
`Q9SYA9`	Arabidopsis thaliana	Probable transcription factor At1g61730	28.509%	Swiss-Prot	weak database homology
`Q9ZU30`	Arabidopsis thaliana	Probable transcription factor At2g01370	34.831%	Swiss-Prot	weak database homology

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