LXL04_016572 | RubberDandelionOmics

Gene overview

LXL04_016572

Reference: OH-1004 Chr: Chr03 Coordinates: 127127434-127129474 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

345 bp · LXL04_016572|LXL04_016572|OH1004|cDNA

ATGAAGGAACGAGAAACAAATCGAAGGCCAATAGCCATCGCGATGATGATTCCAGAATCCATACTTTCAGCAATCGCCGCTGTCTTCGAGTCTGCGTTTCGCCTGTTAATCGGAGTACTCGCGTTCTCGATCCGTCTTTTCTCGGTTATTAAGTATGAAAGTGTTATTCATGAATTCGATCCTTATTTCAATTACAGAGTCACTCAGTTCCTCACAAAGAACGAGATATATGACTTCTGGAATTGGTTTGATGATCGCAC...

CDS

Download CDS FASTA

345 bp · LXL04_016572|LXL04_016572|OH1004|CDS

ATGAAGGAACGAGAAACAAATCGAAGGCCAATAGCCATCGCGATGATGATTCCAGAATCCATACTTTCAGCAATCGCCGCTGTCTTCGAGTCTGCGTTTCGCCTGTTAATCGGAGTACTCGCGTTCTCGATCCGTCTTTTCTCGGTTATTAAGTATGAAAGTGTTATTCATGAATTCGATCCTTATTTCAATTACAGAGTCACTCAGTTCCTCACAAAGAACGAGATATATGACTTCTGGAATTGGTTTGATGATCGCAC...

Protein

Download Protein FASTA

114 aa · LXL04_016572|LXL04_016572|OH1004|PROTEIN

MKERETNRRPIAIAMMIPESILSAIAAVFESAFRLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNEIYDFWNWFDDRTWYPLGRVIGGAVYPGLTLTAGTIWKCG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016572`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016572

Location Chr03:127127434-127129474 (-)

Description Similar to STT3A: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19690`	Catalytic subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	The STT3a subunit isoform of the Arabidopsis oligosaccharyltransferase controls adaptive responses to salt/osmotic stress.2003 · DOI: 10.1105/tpc.013862 Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity.2009 · DOI: 10.1038/emboj.2009.262 Receptor quality control in the endoplasmic reticulum for plant innate immunity.2009 · DOI: 10.1038/emboj.2009.263
`At1g34130`	Catalytic subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0519900`	Catalytic subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016572 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006487 protein N-linked glycosylation Biological Process

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009651 response to salt stress Biological Process

GO:0043687 post-translational protein modification Biological Process

GO:0047484 regulation of response to osmotic stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0008250 oligosaccharyltransferase complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G34130

ath:AT5G19690

bta:507815

dosa:Os05g0519900

sce:YGL022W

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.681

Rank 1 · LXL04_016572 · OH-1004

Mitochondrion0.126

Rank 2 · LXL04_016572 · OH-1004

Extracellular0.051

Rank 3 · LXL04_016572 · OH-1004

Endoplasmic reticulum0.037

Rank 4 · LXL04_016572 · OH-1004

Cytoplasm0.026

Rank 5 · LXL04_016572 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02516.21STT336-112 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016572	`PF02516.21`	STT3	36	112	1.6e-24	87.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93ZY3`	Arabidopsis thaliana	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	79.787%	Swiss-Prot	strong database homology
`Q9FX21`	Arabidopsis thaliana	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	65.789%	Swiss-Prot	moderate database homology
`Q6F2Z1`	Oryza sativa subsp. japonica	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	83.146%	Swiss-Prot	strong database homology

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