LXL04_015540 | RubberDandelionOmics

Gene overview

LXL04_015540

Reference: OH-1004 Chr: Chr03 Coordinates: 75314082-75316840 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1170 bp · LXL04_015540|LXL04_015540|OH1004|cDNA

ATGACTTCTCTTGCTTTTTCTTCAGCGAATCTCGGAGCTACGAACAAATTTCGCTCTGCAATCCCTGCTAGAAACAGTGTAATTAGTTGCAGGGTCAATTTTAAGGAAAACGGGAGACTGATTACACAAACCCTCACCAGTGAGCAAGAAACATTGCCTAATTTCTTGACATCAAATCAGTTTGAGAGAATTCCAGCAAAAAAAGATGACAACAGACTTCGGATTTTTTCAGGCACTGCCAACCCTTTACTATCTGAGgA...

CDS

Download CDS FASTA

1170 bp · LXL04_015540|LXL04_015540|OH1004|CDS

ATGACTTCTCTTGCTTTTTCTTCAGCGAATCTCGGAGCTACGAACAAATTTCGCTCTGCAATCCCTGCTAGAAACAGTGTAATTAGTTGCAGGGTCAATTTTAAGGAAAACGGGAGACTGATTACACAAACCCTCACCAGTGAGCAAGAAACATTGCCTAATTTCTTGACATCAAATCAGTTTGAGAGAATTCCAGCAAAAAAAGATGACAACAGACTTCGGATTTTTTCAGGCACTGCCAACCCTTTACTATCTGAGGA...

Protein

Download Protein FASTA

389 aa · LXL04_015540|LXL04_015540|OH1004|PROTEIN

MTSLAFSSANLGATNKFRSAIPARNSVISCRVNFKENGRLITQTLTSEQETLPNFLTSNQFERIPAKKDDNRLRIFSGTANPLLSEEVACYMGLELGKIDIKRFADGEIYVQLRESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKTITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVHGQPVILDYLASKTIKTDDLVVVSPDVGGVARARAFAKKLSDAPLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015540`
TK1151 ID	TkA02G318550
OH-1004 ID	LXL04_015540
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015540

Location Chr03:75314082-75316840 (+)

Description Similar to PRS1: Ribose-phosphate pyrophosphokinase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44530`	Ribose-phosphate pyrophosphokinase 5, chloroplastic.	No verified direct reference in this release
`At1g32380`	Ribose-phosphate pyrophosphokinase 2, chloroplastic.	No verified direct reference in this release
`At2g35390`	Ribose-phosphate pyrophosphokinase 1, chloroplastic.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0127700`	Ribose-phosphate pyrophosphokinase 1, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015540 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process Biological Process

GO:0006164 purine nucleotide biosynthetic process Biological Process

GO:0009156 ribonucleoside monophosphate biosynthetic process Biological Process

GO:0002189 ribose phosphate diphosphokinase complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004749 ribose phosphate diphosphokinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016301 kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G32380

ath:AT2G35390

ath:AT2G44530

dosa:Os02g0127700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.935

Rank 1 · LXL04_015540 · OH-1004

Mitochondrion0.099

Rank 2 · LXL04_015540 · OH-1004

Cytoplasm0.047

Rank 3 · LXL04_015540 · OH-1004

Peroxisome0.024

Rank 4 · LXL04_015540 · OH-1004

Nucleus0.024

Rank 5 · LXL04_015540 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13793.13Pribosyltran_N74-189 aa

PF00156.34Pribosyltran226-320 aa

PF14572.13Pribosyl_synth274-380 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015540	`PF13793.13`	Pribosyltran_N	74	189	9.4e-52	174.5
LXL04_015540	`PF00156.34`	Pribosyltran	226	320	4.4e-17	62.5
LXL04_015540	`PF14572.13`	Pribosyl_synth	274	380	3.8e-23	83.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64888`	Arabidopsis thaliana	Ribose-phosphate pyrophosphokinase 5, chloroplastic	85.588%	Swiss-Prot	strong database homology
`Q42583`	Arabidopsis thaliana	Ribose-phosphate pyrophosphokinase 2, chloroplastic	84.498%	Swiss-Prot	strong database homology
`Q42581`	Arabidopsis thaliana	Ribose-phosphate pyrophosphokinase 1, chloroplastic	78.261%	Swiss-Prot	strong database homology
`Q6Z2L5`	Oryza sativa subsp. japonica	Ribose-phosphate pyrophosphokinase 1, chloroplastic	87.267%	Swiss-Prot	strong database homology

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