LXL04_013388 | RubberDandelionOmics

Gene overview

LXL04_013388

Reference: OH-1004 Chr: Chr03 Coordinates: 28932757-28934818 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1506 bp · LXL04_013388|LXL04_013388|OH1004|cDNA

ATGGAGGGAGGAGGGCGCGGTGGTAGTAGTGTGGAAATGTTCTTACGCAACTACAAGCTAGGAAAAACACTTGGTATTGGTTCATTTGGAAAAGTCAAAATTGCAGAACATACATTAACAGGGCATAAAGTTGCCATAAAGATCCTCAATCGCCGAAAGATCAAAAACATGGAAATGGAAGAAAAAGTCAGAAGAGAGATTAAGATCTTGAGATTGTTCATGCATCCACATATAATCCGTCTCTATGAAGTAGTGGAAAC...

CDS

Download CDS FASTA

1506 bp · LXL04_013388|LXL04_013388|OH1004|CDS

ATGGAGGGAGGAGGGCGCGGTGGTAGTAGTGTGGAAATGTTCTTACGCAACTACAAGCTAGGAAAAACACTTGGTATTGGTTCATTTGGAAAAGTCAAAATTGCAGAACATACATTAACAGGGCATAAAGTTGCCATAAAGATCCTCAATCGCCGAAAGATCAAAAACATGGAAATGGAAGAAAAAGTCAGAAGAGAGATTAAGATCTTGAGATTGTTCATGCATCCACATATAATCCGTCTCTATGAAGTAGTGGAAAC...

Protein

Download Protein FASTA

501 aa · LXL04_013388|LXL04_013388|OH1004|PROTEIN

MEGGGRGGSSVEMFLRNYKLGKTLGIGSFGKVKIAEHTLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVVETPSDIYVVMEYVKSGELFDYIVEKGRLHEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDAKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRLLVVDPMKRMT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013388`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013388

Location Chr03:28932757-28934818 (-)

Description Similar to KIN10: SNF1-related protein kinase catalytic subunit alpha KIN10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01090`	Catalytic subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, a central regulator of cellular energy homeostasis, which, in response to seemingly unrelated darkness, sugar and stress conditions, activates energy-producing pathways and inhibits energy-consuming processes.	Regulatory interaction of PRL1 WD protein with Arabidopsis SNF1-like protein kinases.1999 · DOI: 10.1073/pnas.96.9.5322 A central integrator of transcription networks in plant stress and energy signalling.2007 · DOI: 10.1038/nature06069 Cross-phosphorylation between Arabidopsis thaliana sucrose nonfermenting 1-related protein kinase 1 (AtSnRK1) and its activating kinase (AtSnAK) determines their catalytic activities.2010 · DOI: 10.1074/jbc.m109.079194 AKIN10 and FUSCA3 interact to control lateral organ development and phase transitions in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2011.04832.x Overlapping and distinct roles of AKIN10 and FUSCA3 in ABA and sugar signaling during seed germination.2012 · DOI: 10.4161/psb.21549 Inverse modulation of the energy sensor Snf1-related protein kinase 1 on hypoxia adaptation and salt stress tolerance in Arabidopsis thaliana.2014 · DOI: 10.1111/pce.12375 AKIN10 delays flowering by inactivating IDD8 transcription factor through protein phosphorylation in Arabidopsis.2015 · DOI: 10.1186/s12870-015-0503-8 Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence.2016 · DOI: 10.1093/jxb/erw107 AKIN10, a representative Arabidopsis SNF1-related protein kinase 1 (SnRK1), phosphorylates and downregulates plant HMG-CoA reductase.2017 · DOI: 10.1002/1873-3468.12618 Phosphorylation of WRINKLED1 by KIN10 Results in Its Proteasomal Degradation, Providing a Link between Energy Homeostasis and Lipid Biosynthesis.2017 · DOI: 10.1105/tpc.17.00019 The AMP-Activated Protein Kinase KIN10 Is Involved in the Regulation of Autophagy in Arabidopsis .2017 · DOI: 10.3389/fpls.2017.01201 SnRK1 activates autophagy via the TOR signaling pathway in Arabidopsis thaliana.2017 · DOI: 10.1371/journal.pone.0182591 SnRK1 phosphorylation of FUSCA3 positively regulates embryogenesis, seed yield, and plant growth at high temperature in Arabidopsis.2017 · DOI: 10.1093/jxb/erx233 The Energy-Signaling Hub SnRK1 Is Important for Sucrose-Induced Hypocotyl Elongation.2018 · DOI: 10.1104/pp.17.01395 The Role of Arabidopsis Inositol Polyphosphate Kinase AtIPK2β in Glucose Suppression of Seed Germination and Seedling Development.2018 · DOI: 10.1093/pcp/pcx186 Involvement of the SnRK1 subunit KIN10 in sucrose-induced hypocotyl elongation.2018 · DOI: 10.1080/15592324.2018.1457913
`At3g29160`	Catalytic subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, a central regulator of cellular energy homeostasis, which, in response to seemingly unrelated darkness, sugar and stress conditions, activates energy-producing pathways and inhibits energy-consuming processes.	Regulatory interaction of PRL1 WD protein with Arabidopsis SNF1-like protein kinases.1999 · DOI: 10.1073/pnas.96.9.5322 A central integrator of transcription networks in plant stress and energy signalling.2007 · DOI: 10.1038/nature06069

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0530500`	Serine/threonine-protein kinase involved in sugar signaling during germination and seedling growth.	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice.2007 · DOI: 10.1105/tpc.105.037887
`Os08g0484600`	Suppressor of flowering in long days (LD) via the that up-regulation of HD1 and the down-regulation of EHD1.	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.2016 · DOI: 10.1371/journal.pgen.1005927
`UniProt: B8BBT7`	Suppressor of flowering in long days (LD) via the that up-regulation of HD1 and the down-regulation of EHD1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013388 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001666 response to hypoxia Biological Process

GO:0003006 developmental process involved in reproduction Biological Process

GO:0005982 starch metabolic process Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009594 detection of nutrient Biological Process

GO:0009635 response to herbicide Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009743 response to carbohydrate Biological Process

GO:0009749 response to glucose Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT3G01090

ath:AT3G29160

dosa:Os05g0530500

dosa:Os08g0484600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.557

Rank 1 · LXL04_013388 · OH-1004

Nucleus0.379

Rank 2 · LXL04_013388 · OH-1004

Cell membrane0.180

Rank 3 · LXL04_013388 · OH-1004

Golgi apparatus0.064

Rank 4 · LXL04_013388 · OH-1004

Lysosome / Vacuole0.059

Rank 5 · LXL04_013388 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase18-270 aa

PF07714.24PK_Tyr_Ser-Thr19-265 aa

PF14531.13Kinase-like123-218 aa

PF16579.12AdenylateSensor383-478 aa

PF02149.26KA1458-500 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013388	`PF00069.32`	Pkinase	18	270	5.4e-82	275.8
LXL04_013388	`PF07714.24`	PK_Tyr_Ser-Thr	19	265	7.5e-41	140.8
LXL04_013388	`PF14531.13`	Kinase-like	123	218	4.2e-07	30.2
LXL04_013388	`PF16579.12`	AdenylateSensor	383	478	7.6e-09	36.7
LXL04_013388	`PF02149.26`	KA1	458	500	1.3e-14	54.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38997`	Arabidopsis thaliana	SNF1-related protein kinase catalytic subunit alpha KIN10	80.897%	Swiss-Prot	strong database homology
`P92958`	Arabidopsis thaliana	SNF1-related protein kinase catalytic subunit alpha KIN11	76.238%	Swiss-Prot	strong database homology
`Q852Q2`	Oryza sativa subsp. japonica	Serine/threonine protein kinase OSK1	75.194%	Swiss-Prot	strong database homology
`Q852Q1`	Oryza sativa subsp. japonica	Serine/threonine protein kinase OSK4	72.745%	Swiss-Prot	strong database homology
`B8BBT7`	Oryza sativa subsp. indica	Serine/threonine protein kinase OSK4	72.745%	Swiss-Prot	strong database homology

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