Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1425 bp · LXL04_009991|LXL04_009991|OH1004|cDNA
ATGGTTGCTTCTGTAAAACTGACAAACATATCGAATAGTGGTTCGAGCATAGTCAGGACCCCGGTGCACAGTGACGACCTCCGCTCCCTTGCTGCCCTTCCTCCTCCGACCAGACGCCGTCCTCCGCCGCCTCCGACTGCGCACCTTCTATCTCAGGGCCTGAAGAACGACCATGGTAGGACCATCTTCAGGgagaaggaaaagaagaagaaaaagaagaaatcAAAGATCAAAACCAAGCCTGAAATGAATGGTGTTCT...
1425 bp · LXL04_009991|LXL04_009991|OH1004|CDS
ATGGTTGCTTCTGTAAAACTGACAAACATATCGAATAGTGGTTCGAGCATAGTCAGGACCCCGGTGCACAGTGACGACCTCCGCTCCCTTGCTGCCCTTCCTCCTCCGACCAGACGCCGTCCTCCGCCGCCTCCGACTGCGCACCTTCTATCTCAGGGCCTGAAGAACGACCATGGTAGGACCATCTTCAGGGAGAAGGAAAAGAAGAAGAAAAAGAAGAAATCAAAGATCAAAACCAAGCCTGAAATGAATGGTGTTCT...
Protein
Download Protein FASTA474 aa · LXL04_009991|LXL04_009991|OH1004|PROTEIN
MVASVKLTNISNSGSSIVRTPVHSDDLRSLAALPPPTRRRPPPPPTAHLLSQGLKNDHGRTIFREKEKKKKKKKSKIKTKPEMNGVLVVDEDPIWQKPVQIEEEDNESEDEEKPQVDEDIEVKRMKRLEHLKTQRPFGTISEDGSGWVPISSDTPKTFTSDDINADMSPPRKRRARNDTPERELTQNADMSPPRRRRARNDTPSPEPDRESDLSPPRKGQGQNRPREDLSPPRRKREDRHQSSDLSPPRKPMKELGLKDR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009991 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009991 |
|---|---|
| Location | Chr02:137518227-137521655 (-) |
| Description | Similar to Bud13: BUD13 homolog |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000398 mRNA splicing, via spliceosome Biological Process GO:1903241 U2-type prespliceosome assembly Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0005684 U2-type spliceosomal complex Cellular Component GO:0070274 RES complex Cellular Component GO:0071005 U2-type precatalytic spliceosome Cellular Component GO:0071006 U2-type catalytic step 1 spliceosome Cellular Component GO:0071018 U12-type catalytic step 2 spliceosome Cellular Component GO:0003723 RNA binding Molecular Function |
| KEGG gene cross-reference | cel:CELE_R08D7.1 hsa:84811 mmu:215051 rno:300687 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF09736.15Bud13301-457 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_009991 | PF09736.15 | Bud13 | 301 | 457 | 4.5e-38 | 131.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.