LXL04_004950 | RubberDandelionOmics

Gene overview

LXL04_004950

Reference: OH-1004 Chr: Chr01 Coordinates: 150765061-150769195 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

996 bp · LXL04_004950|LXL04_004950|OH1004|cDNA

ATGGCGACTCCATTGATGACGGGGCTTGCAGTTGCAGCTGCTGCATATGCTGGTCGATATGGGATCCAAGCTTGGCAGGCATTCAAGGCGAGACCAGCTTCACCTGCTGCTGCTTTTAGAAAGTTCTATCAAGGTGGTTTCCAACCTCAAATGACAAGAAGGGAGGCTGCTCTTATTCTTGGAGTAAGGGAAAGTACAGCGGTTGATAAGGTAAGGGAGGCCCATAGAAGGGTGATGGTGGCAAACCATCCGGATGCTGG...

CDS

Download CDS FASTA

996 bp · LXL04_004950|LXL04_004950|OH1004|CDS

ATGGCGACTCCATTGATGACGGGGCTTGCAGTTGCAGCTGCTGCATATGCTGGTCGATATGGGATCCAAGCTTGGCAGGCATTCAAGGCGAGACCAGCTTCACCTGCTGCTGCTTTTAGAAAGTTCTATCAAGGTGGTTTCCAACCTCAAATGACAAGAAGGGAGGCTGCTCTTATTCTTGGAGTAAGGGAAAGTACAGCGGTTGATAAGGTAAGGGAGGCCCATAGAAGGGTGATGGTGGCAAACCATCCGGATGCTGG...

Protein

Download Protein FASTA

331 aa · LXL04_004950|LXL04_004950|OH1004|PROTEIN

MATPLMTGLAVAAAAYAGRYGIQAWQAFKARPASPAAAFRKFYQGGFQPQMTRREAALILGVRESTAVDKVREAHRRVMVANHPDAGGSHYLASKINEAKEMLMRKSKSQSQYSISPFKRDFQLNALIKFWNRLHCGQCRKFHKLKMKTIRKVKQFHFLLVKQRRMVCLLSRNPQKPIIMGVEVENGCGVGEGGGGGVGKFRSRAGFGYLVECEIGWDVPPLMKGLGVVAVVVAAYAFGAISSTSRKYIGGFRPQMTSRE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004950`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004950

Location Chr01:150765061-150769195 (-)

Description Similar to TIM14-1: Mitochondrial import inner membrane translocase subunit TIM14-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35795`	Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.	No verified direct reference in this release
`At5g03030`	Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.	No verified direct reference in this release
`At3g09700`	Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004950 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0030150 protein import into mitochondrial matrix Biological Process

GO:0001405 PAM complex, Tim23 associated import motor Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009536 plastid Cellular Component

GO:0001671 ATPase activator activity Molecular Function

KEGG gene cross-reference

ath:AT2G35795

ath:AT3G09700

ath:AT5G03030

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.656

Rank 1 · LXL04_004950 · OH-1004

Plastid0.177

Rank 2 · LXL04_004950 · OH-1004

Cytoplasm0.090

Rank 3 · LXL04_004950 · OH-1004

Nucleus0.063

Rank 4 · LXL04_004950 · OH-1004

Peroxisome0.047

Rank 5 · LXL04_004950 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30914.1TIM14_N_euk2-29 aa

PF03656.19Pam168-110 aa

PF30912.1TIM141_C40-111 aa

PF00226.37DnaJ59-109 aa

PF30912.1TIM141_C246-319 aa

PF03656.19Pam16255-310 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004950	`PF30914.1`	TIM14_N_euk	2	29	1.5e-15	57.3
LXL04_004950	`PF03656.19`	Pam16	8	110	2.9e-13	50.7
LXL04_004950	`PF30912.1`	TIM141_C	40	111	2.3e-79	262.2
LXL04_004950	`PF00226.37`	DnaJ	59	109	1.2e-09	38.8
LXL04_004950	`PF30912.1`	TIM141_C	246	319	2.3e-79	262.2
LXL04_004950	`PF03656.19`	Pam16	255	310	2.9e-13	50.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8RV04`	Arabidopsis thaliana	Mitochondrial import inner membrane translocase subunit TIM14-1	73.394%	Swiss-Prot	weak database homology
`Q9LYY2`	Arabidopsis thaliana	Mitochondrial import inner membrane translocase subunit TIM14-3	76.147%	Swiss-Prot	weak database homology
`Q9SF33`	Arabidopsis thaliana	Mitochondrial import inner membrane translocase subunit TIM14-2	74.725%	Swiss-Prot	weak database homology

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