LXL04_004551 | RubberDandelionOmics

Gene overview

LXL04_004551

Reference: OH-1004 Chr: Chr01 Coordinates: 140359556-140361967 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1734 bp · LXL04_004551|LXL04_004551|OH1004|cDNA

CCAACTTTGAGTTCTTCTTCGTTTGCACATACACTCTCTCACACACATTAGTGTGTGTGTGAAAGCCCTTTTCACACACCAATCCATGAATCACAACATACTATCAAACACCTATATATacacacttatatatatacatcatGCCCCACACACCAACAAATAGCATCCATCCTTCTTTCTTCTATCTTTTCAATCATGGGAGCTGTTCCTCCTCAAATTCTCTATCTCATTCCTATTCTTCTTCTTGTTTTCATATCTTC...

CDS

Download CDS FASTA

1539 bp · LXL04_004551|LXL04_004551|OH1004|CDS

ATGGGAGCTGTTCCTCCTCAAATTCTCTATCTCATTCCTATTCTTCTTCTTGTTTTCATATCTTCGTCATCTGCAAGAACTCATCCTTCTTCGGTTTCTCCATTTCATCATTCAAAATCTTTGAGAAAAACCGGACACCAACTCATCAAGGACCTCAATTTGCATCCGAATCTTGATGTTAACATCGTTAAATCCTACTCCAATTCCTCTTATCTTGACCATGAACTCAAAGTCACGCAATCTGGGATTGTCGAAAAAAG...

Protein

Download Protein FASTA

512 aa · LXL04_004551|LXL04_004551|OH1004|PROTEIN

MGAVPPQILYLIPILLLVFISSSSARTHPSSVSPFHHSKSLRKTGHQLIKDLNLHPNLDVNIVKSYSNSSYLDHELKVTQSGIVEKRLSLQILGDSGATVHDLAQHAGYYKIEHTVDARMFYFFFESRSAKTDPVVIWLTGGPGCSSELALFYENGPFKVNNNLSLTWNDYGWDKVSNLIYVDQPTGTGFSYSSSDQDIRHDETGVSNDLYFFLQAFFKAHPDYVNNDFFITGESYAGHYIPAFAARVNQGNKKKEGIHI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004551`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004551

Location Chr01:140359556-140361967 (-)

Description Similar to CBP3: Serine carboxypeptidase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g45010`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g10410`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0114200`	Serine carboxypeptidase 3.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004551 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT3G10410

ath:AT3G45010

dosa:Os02g0114200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.584

Rank 1 · LXL04_004551 · OH-1004

Extracellular0.166

Rank 2 · LXL04_004551 · OH-1004

Cytoplasm0.117

Rank 3 · LXL04_004551 · OH-1004

Endoplasmic reticulum0.105

Rank 4 · LXL04_004551 · OH-1004

Cell membrane0.088

Rank 5 · LXL04_004551 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450.29Peptidase_S10102-500 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004551	`PF00450.29`	Peptidase_S10	102	500	8.2e-129	431.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q56WF8`	Arabidopsis thaliana	Serine carboxypeptidase-like 48	60.279%	Swiss-Prot	strong database homology
`P32826`	Arabidopsis thaliana	Serine carboxypeptidase-like 49	59.766%	Swiss-Prot	strong database homology
`P37891`	Oryza sativa subsp. japonica	Serine carboxypeptidase 3	64.240%	Swiss-Prot	strong database homology

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