LXL04_000439 | RubberDandelionOmics

Gene overview

LXL04_000439

Reference: OH-1004 Chr: Chr01 Coordinates: 8227855-8230544 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2610 bp · LXL04_000439|LXL04_000439|OH1004|cDNA

ATGGAAGACGACCGCCGTGTCGGAGATCTTGTCCGGGAATTAGTCCACCGACTGCATAACATTTCTTCTTCCTCACTTTCAAActcaaaccctaaccctagcaATGTCAAGTACGCCGCTCGCATTTTATCCAGCCGAATGACGCCATCGATCTCCGCCGACGAAGCCGCTATGGCATATTCAATCAAGAGCCAACTGGTTAAACAAGGTAAACTGTCTGATGCCTTATCCTTTGCAGATCTCTATTCTAAATTCGCTTC...

CDS

Download CDS FASTA

2610 bp · LXL04_000439|LXL04_000439|OH1004|CDS

ATGGAAGACGACCGCCGTGTCGGAGATCTTGTCCGGGAATTAGTCCACCGACTGCATAACATTTCTTCTTCCTCACTTTCAAACTCAAACCCTAACCCTAGCAATGTCAAGTACGCCGCTCGCATTTTATCCAGCCGAATGACGCCATCGATCTCCGCCGACGAAGCCGCTATGGCATATTCAATCAAGAGCCAACTGGTTAAACAAGGTAAACTGTCTGATGCCTTATCCTTTGCAGATCTCTATTCTAAATTCGCTTC...

Protein

Download Protein FASTA

869 aa · LXL04_000439|LXL04_000439|OH1004|PROTEIN

MEDDRRVGDLVRELVHRLHNISSSSLSNSNPNPSNVKYAARILSSRMTPSISADEAAMAYSIKSQLVKQGKLSDALSFADLYSKFASKIGPGSVKNKWAVLYLLKVISEDRKSNLKLQSDSSFSGGLPTLLESDTNGNHAWVTKDSSGFSRLGKKLEDVANDDALSNETVNGLRHSNSTKLNNGGVLLVSKDPENLRDIAYREFAVIVKEENDVSEEVLVRDVLYACQGIDGKYVKFNETIDGYALLDSVRVPKPTRIMI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000439`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000439

Location Chr01:8227855-8230544 (-)

Description Similar to GCP3: Gamma-tubulin complex component 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g06680`	Gamma-tubulin complex is necessary for microtubule nucleation at the microtubule organizing centers (MTOCs).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000439 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0007020 microtubule nucleation Biological Process

GO:0007338 single fertilization Biological Process

GO:0009624 response to nematode Biological Process

GO:0031122 cytoplasmic microtubule organization Biological Process

GO:0051225 spindle assembly Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0090063 positive regulation of microtubule nucleation Biological Process

GO:0000922 spindle pole Cellular Component

GO:0000930 gamma-tubulin complex Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT5G06680

hsa:10426

mmu:259279

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.432

Rank 1 · LXL04_000439 · OH-1004

Nucleus0.278

Rank 2 · LXL04_000439 · OH-1004

Golgi apparatus0.250

Rank 3 · LXL04_000439 · OH-1004

Cell membrane0.133

Rank 4 · LXL04_000439 · OH-1004

Lysosome / Vacuole0.129

Rank 5 · LXL04_000439 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17681.7GCP_N_terminal220-523 aa

PF04130.19GCP_C_terminal529-865 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000439	`PF17681.7`	GCP_N_terminal	220	523	2.4e-78	264.4
LXL04_000439	`PF04130.19`	GCP_C_terminal	529	865	4.7e-80	270.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FG37`	Arabidopsis thaliana	Gamma-tubulin complex component 3	69.195%	Swiss-Prot	strong database homology

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