contig00001
Bars show means or original reported values. Black SD error bars and sample points are shown when replicate observations are available. n is the number of samples/records summarized.
Expression Results
Query IDs: contig00001
High-rubber, low-rubber and Y11 expression
Reference: Published de novo transcriptomeUnit: RPKMSamples/records: 3
HR, LR and Y11 materials; RPKM values from the original supplementary table
Source: PMID30514210 DOI
Original contig IDs are retained without a sequence-verified current gene mapping. One reported value per material is available, without replicate-level uncertainty.
Grouped expression and uncertainty
| Gene/matrix ID | Group | Mean/reported value | SD | SE | n | Unit |
|---|---|---|---|---|---|---|
contig00001 | High-rubber material | 36.7871 | — | — | 1 | RPKM |
contig00001 | Low-rubber material | 28.3993 | — | — | 1 | RPKM |
contig00001 | Y11 material | 121.866 | — | — | 1 | RPKM |
SD is the sample standard deviation (n−1); SE = SD/√n. Uncertainty is not inferred from one reported value. Multiple libraries from one BioSample are not counted as independent replicates. Studies, references and units remain separate.
Sample-level expression values (3)
| Gene/matrix ID | Sample | Tissue | Treatment | Time | Material | Replicate | Expression | Unit |
|---|---|---|---|---|---|---|---|---|
contig00001 | HR | High-rubber material | 36.787142 | RPKM | ||||
contig00001 | LR | Low-rubber material | 28.399321 | RPKM | ||||
contig00001 | Y11 | Y11 material | 121.86597 | RPKM |
Differential comparisons reported in the publication
Statistics are retained from the source table; no new test is run. A source-reported P=0 is retained as reported.
Download current publication comparisons (TSV)| Contig | Contrast | FC | P | Source table |
|---|---|---|---|---|
| contig00001 | HR_vs_LR | 1.2953528350850083 | 0.226313 | Tab.S7; Tab.S8_DEG |
| contig00001 | HR_vs_Y11 | 0.3018655674591885 | 0.0 | Tab.S7; Tab.S8_DEG |
| contig00001 | LR_vs_Y11 | 0.23303733105225988 | 0.0 | Tab.S7; Tab.S8_DEG |
Annotations from the original publication table
Source annotations are retained as reported and do not establish mapping to a current reference gene.
Download source annotations for these contigs (TSV)| Contig | NR | Source description | Arabidopsis | Swiss-Prot | GO | KEGG |
|---|---|---|---|---|---|---|
| contig00001 | gi|334702373|ref|YP_004465235.1| | hypothetical chloroplast RF19 | ATCG01130 | Q1KXR1.1 | C:GO:0009706; P:GO:0015031; C:GO:0016021 |