Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA08G342490`
Query reference	TK1151
Location	Chr08:87809153-87811056 (+)
Description	Similar to PNSL5: Photosynthetic NDH subunit of lumenal location 5%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025739 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 31 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13120`	NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain.	Profound redox sensitivity of peptidyl-prolyl isomerase activity in Arabidopsis thylakoid lumen.2006 · DOI: 10.1016/j.febslet.2006.05.054 The cyclophilin CYP20-2 modulates the conformation of BRASSINAZOLE-RESISTANT1, which binds the promoter of FLOWERING LOCUS D to regulate flowering in Arabidopsis.2013 · DOI: 10.1105/tpc.113.110296
`At3g62030`	PPIases accelerate the folding of proteins.	A cyclophilin links redox and light signals to cysteine biosynthesis and stress responses in chloroplasts.2008 · DOI: 10.1073/pnas.0808204105

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000413	protein peptidyl-prolyl isomerization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006457	protein folding	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006979	response to oxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007165	signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009642	response to light intensity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010275	NAD(P)H dehydrogenase complex assembly	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010555	response to mannitol	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019344	L-cysteine biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1904027	negative regulation of collagen fibril organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.111; coverage=64.516; evalue=1.53e-80; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005788	endoplasmic reticulum lumen	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.667; coverage=64.516; evalue=1.73e-83; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009533	chloroplast stromal thylakoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009534	chloroplast thylakoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009535	chloroplast thylakoid membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009543	chloroplast thylakoid lumen	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009579	thylakoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009941	chloroplast envelope	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0022626	cytosolic ribosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031977	thylakoid lumen	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032991	protein-containing complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.111; coverage=64.516; evalue=1.53e-80; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048046	apoplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016018	cyclosporin A binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043424	protein histidine kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G62030	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.996; coverage=85.663; evalue=9.35e-93	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G13120	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.068; coverage=89.247; evalue=2.32e-113	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	gga:396447	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.111; coverage=64.516; evalue=1.53e-80	UniProtKB/Swiss-Prot DAT 2026 current_release