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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA08G200380
Query referenceTK1151
LocationChr08:52326271-52329208 (-)
DescriptionSimilar to RS2Z32: Serine/arginine-rich splicing factor RS2Z32 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032717 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g37340 Splicing factor involved in constitutive and/or alternative splicing.
Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins.2006 · DOI: 10.1093/nar/gkl570
CYCLIN-DEPENDENT KINASE G1 is associated with the spliceosome to regulate CALLOSE SYNTHASE5 splicing and pollen wall formation in Arabidopsis.2013 · DOI: 10.1105/tpc.112.107896
At3g53500 Probably involved in intron recognition and spliceosome assembly. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000245spliceosomal complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.991; coverage=33.333; evalue=1.81e-58; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000375RNA splicing, via transesterification reactionsBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.692; coverage=15.339; evalue=7.94e-10; UniProt GO evidence=TAS:ProtIncUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000381regulation of alternative mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.42; coverage=75.811; evalue=5.84e-64; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000398mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.42; coverage=75.811; evalue=5.84e-64; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.611; coverage=21.239; evalue=5.62e-10; UniProt GO evidence=TAS:ProtIncUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008380RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.42; coverage=75.811; evalue=5.84e-64; UniProt GO evidence=NAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032868response to insulinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.692; coverage=15.339; evalue=7.94e-10; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048025negative regulation of mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.611; coverage=21.239; evalue=5.62e-10; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051028mRNA transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.611; coverage=21.239; evalue=5.62e-10; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.42; coverage=75.811; evalue=5.84e-64; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.611; coverage=21.239; evalue=5.62e-10; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005681spliceosomal complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.42; coverage=75.811; evalue=5.84e-64; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.611; coverage=21.239; evalue=5.62e-10; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.42; coverage=75.811; evalue=5.84e-64; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070062extracellular exosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.611; coverage=21.239; evalue=5.62e-10; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.611; coverage=21.239; evalue=5.62e-10; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.42; coverage=75.811; evalue=5.84e-64; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.42; coverage=75.811; evalue=5.84e-64; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019904protein domain specific bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.611; coverage=21.239; evalue=5.62e-10; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990825sequence-specific mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.692; coverage=15.339; evalue=7.94e-10; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G37340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.991; coverage=33.333; evalue=1.81e-58UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G53500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.42; coverage=75.811; evalue=5.84e-64UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:507066KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.611; coverage=21.239; evalue=5.91e-10UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:6429KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.692; coverage=15.339; evalue=7.94e-10UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:6432KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.611; coverage=21.239; evalue=5.62e-10UniProtKB/Swiss-Prot DAT 2026 current_release