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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA08G023530
Query referenceTK1151
LocationChr08:5978275-5980267 (-)
DescriptionSimilar to NTH1: Endonuclease III homolog 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_018151 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g31450 Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage.
cDNA cloning, expression and functional characterization of an Arabidopsis thaliana homologue of the Escherichia coli DNA repair enzyme endonuclease III.2000 · DOI: 10.1023/a:1006429114451
At1g05900 Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage.
Evidence for base excision repair of oxidative DNA damage in chloroplasts of Arabidopsis thaliana.2009 · DOI: 10.1074/jbc.m109.008342

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.215; coverage=66.571; evalue=2.66e-72; UniProt GO evidence=TAS:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006284base-excision repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006285base-excision repair, AP site formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006289nucleotide-excision repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042644chloroplast nucleoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000703oxidized pyrimidine nucleobase lesion DNA N-glycosylase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003684damaged DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.215; coverage=66.571; evalue=2.66e-72; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003690double-stranded DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.215; coverage=66.571; evalue=2.66e-72; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019104DNA N-glycosylase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00515394 iron, 4 sulfur cluster bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140078class I DNA-(apurinic or apyrimidinic site) endonuclease activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G05900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.374; coverage=93.143; evalue=3.83e-112UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G31450KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.923; coverage=92.857; evalue=4.23e-124UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:535203KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.0; coverage=63.429; evalue=7.35e-73UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGgga:416551KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.893; coverage=64.0; evalue=1.58e-72UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:18207KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.215; coverage=66.571; evalue=2.66e-72UniProtKB/Swiss-Prot DAT 2026 current_release