Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA08G003540 |
|---|---|
| Query reference | TK1151 |
| Location | Chr08:903739-905393 (+) |
| Description | Similar to DOF4.6: Dof zinc finger protein DOF4.6 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021575 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g55370 |
Transcription factor that binds specifically to a 5'-AA[AG]G- 3' consensus core sequence. | |
At2g46590 |
Transcription factor specifically involved in the maternal control of seed germination. | No verified direct reference in this release |
At3g61850 |
Transcription factor specifically involved in the maternal control of seed germination. | No verified direct reference in this release |
At5g60200 |
Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0567800 |
Transcription factor that may transactivate seed storage protein genes in developing seeds. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.714; coverage=120.132; evalue=4.99e-44; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.714; coverage=120.132; evalue=4.99e-44; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009639 | response to red or far red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.948; coverage=95.38; evalue=4.07e-40; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009640 | photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.612; coverage=22.112; evalue=1.27e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009845 | seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.948; coverage=95.38; evalue=4.07e-40; UniProt GO evidence=IMP:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010087 | phloem or xylem histogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.476; coverage=27.723; evalue=1.96e-32; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.948; coverage=95.38; evalue=4.07e-40; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.612; coverage=22.112; evalue=1.27e-30; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048364 | root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.476; coverage=27.723; evalue=1.96e-32; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090057 | root radial pattern formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.476; coverage=27.723; evalue=1.96e-32; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.714; coverage=120.132; evalue=4.99e-44; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.948; coverage=95.38; evalue=4.07e-40; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.714; coverage=120.132; evalue=4.99e-44; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.948; coverage=95.38; evalue=4.07e-40; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.714; coverage=120.132; evalue=4.99e-44; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.714; coverage=120.132; evalue=4.99e-44; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G55370 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.612; coverage=22.112; evalue=1.27e-30 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G61850 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.948; coverage=95.38; evalue=4.07e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G24060 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.714; coverage=120.132; evalue=4.99e-44 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G60200 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.476; coverage=27.723; evalue=1.96e-32 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os04g0567800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.608; coverage=111.221; evalue=3.54e-32 | UniProtKB/Swiss-Prot DAT 2026 current_release |