Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA06G075610`
Query reference	TK1151
Location	Chr06:20263140-20264886 (+)
Description	Similar to WHY1: Single-stranded DNA-binding protein WHY1%2C chloroplastic (Solanum tuberosum OX%3D4113)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025205 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02740`	Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus.	Whirly proteins maintain plastid genome stability in Arabidopsis.2009 · DOI: 10.1073/pnas.0901710106 Recruitment of AtWHY1 and AtWHY3 by a distal element upstream of the kinesin gene AtKP1 to mediate transcriptional repression.2009 · DOI: 10.1007/s11103-009-9533-7
`At1g14410`	Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus.	A "Whirly" transcription factor is required for salicylic acid-dependent disease resistance in Arabidopsis.2004 · DOI: 10.1016/s1534-5807(04)00028-0 Single-stranded DNA binding factor AtWHY1 modulates telomere length homeostasis in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2006.02974.x Whirly proteins maintain plastid genome stability in Arabidopsis.2009 · DOI: 10.1073/pnas.0901710106 Recruitment of AtWHY1 and AtWHY3 by a distal element upstream of the kinesin gene AtKP1 to mediate transcriptional repression.2009 · DOI: 10.1007/s11103-009-9533-7
`At1g71260`	Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery.	Overexpression of mtDNA-associated AtWhy2 compromises mitochondrial function.2008 · DOI: 10.1186/1471-2229-8-42 A RAD52-like single-stranded DNA binding protein affects mitochondrial DNA repair by recombination.2012 · DOI: 10.1111/j.1365-313x.2012.05097.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006281	DNA repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.946; coverage=87.698; evalue=1.34e-112; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009627	systemic acquired resistance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IMP:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009863	salicylic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032204	regulation of telomere maintenance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IMP:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032211	negative regulation of telomere maintenance via telomerase	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045910	negative regulation of DNA recombination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.391; coverage=73.016; evalue=2.24e-91; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=TAS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000781	chromosome, telomeric region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005576	extracellular region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.946; coverage=87.698; evalue=1.34e-112; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.946; coverage=87.698; evalue=1.34e-112; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042644	chloroplast nucleoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990391	DNA repair complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003697	single-stranded DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003714	transcription corepressor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.391; coverage=73.016; evalue=2.24e-91; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042162	telomeric DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G14410	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.142; coverage=89.683; evalue=1.23e-112	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G02740	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.946; coverage=87.698; evalue=1.34e-112	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	sot:102577544	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.852; coverage=85.714; evalue=1e-120	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	sot:102577630	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.093; coverage=68.254; evalue=2.46e-55	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	zma:100170235	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.391; coverage=73.016; evalue=2.24e-91	UniProtKB/Swiss-Prot DAT 2026 current_release