Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA06G052180 |
|---|---|
| Query reference | TK1151 |
| Location | Chr06:14165873-14167361 (+) |
| Description | Similar to MYB4: Transcription factor MYB4 (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_025550 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 14 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g16490 |
Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. | |
At2g31180 |
Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. | |
At1g79180 |
Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0517100 |
Transcriptional activator involved in cold stress response. |
Overexpression of the rice Osmyb4 gene increases chilling and freezing tolerance of Arabidopsis thaliana plants.2004 · DOI: 10.1046/j.1365-313x.2003.01938.x
|
Os02g0624300 |
Acts as a negative regulator of cold tolerance. |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000162 | L-tryptophan biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.718; coverage=72.541; evalue=9.78e-47; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002213 | defense response to insect | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.718; coverage=72.541; evalue=9.78e-47; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=47.541; evalue=7.1e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009409 | response to cold | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=47.541; evalue=7.1e-49; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009414 | response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.438; coverage=72.951; evalue=1.96e-46; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.438; coverage=72.951; evalue=1.96e-46; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009759 | indole glucosinolate biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.718; coverage=72.541; evalue=9.78e-47; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009909 | regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.552; coverage=59.426; evalue=4.41e-48; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010438 | cellular response to sulfur starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.718; coverage=72.541; evalue=9.78e-47; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=47.541; evalue=7.1e-49; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=47.541; evalue=7.1e-49; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.552; coverage=59.426; evalue=4.41e-48; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=47.541; evalue=7.1e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.552; coverage=59.426; evalue=4.41e-48; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G06180 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.552; coverage=59.426; evalue=4.41e-48 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G23250 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.438; coverage=72.951; evalue=1.96e-46 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G60890 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.718; coverage=72.541; evalue=9.78e-47 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os02g0624300 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.559; coverage=48.361; evalue=3.6e-48 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os04g0517100 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=47.541; evalue=7.1e-49 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4330027 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.559; coverage=48.361; evalue=3.6e-48 | UniProtKB/Swiss-Prot DAT 2026 current_release |