Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA06G021270 |
|---|---|
| Query reference | TK1151 |
| Location | Chr06:5797553-5800243 (-) |
| Description | Similar to UVH1: DNA repair endonuclease UVH1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_026211 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 38 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g41150 |
Seems to be involved in nucleotide excision repair (NER) of damaged DNA (dark repair mechanism). |
AtRAD1, a plant homologue of human and yeast nucleotide excision repair endonucleases, is involved in dark repair of UV damages and recombination.2000 · DOI: 10.1046/j.1365-313x.2000.00694.x Repair of UV damage in plants by nucleotide excision repair: Arabidopsis UVH1 DNA repair gene is a homolog of Saccharomyces cerevisiae Rad1.2000 · DOI: 10.1046/j.1365-313x.2000.00707.x The Arabidopsis UVH1 gene is a homolog of the yeast repair endonuclease RAD1.2000 · DOI: 10.1104/pp.124.2.579
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000712 | resolution of meiotic recombination intermediates | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000720 | pyrimidine dimer repair by nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000723 | telomere maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000724 | double-strand break repair via homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000736 | double-strand break repair via single-strand annealing, removal of nonhomologous ends | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.856; coverage=103.386; evalue=1.5e-158; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006289 | nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006303 | double-strand break repair via nonhomologous end joining | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007131 | reciprocal meiotic recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.853; coverage=102.751; evalue=6.11e-148; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009314 | response to radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009411 | response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009650 | UV protection | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010506 | regulation of autophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032205 | negative regulation of telomere maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034644 | cellular response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045002 | double-strand break repair via single-strand annealing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.853; coverage=102.751; evalue=6.11e-148; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061819 | telomeric DNA-containing double minutes formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901255 | nucleotide-excision repair involved in interstrand cross-link repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904357 | negative regulation of telomere maintenance via telomere lengthening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905765 | negative regulation of protection from non-homologous end joining at telomere | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000109 | nucleotide-excision repair complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000110 | nucleotide-excision repair factor 1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000781 | chromosome, telomeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.856; coverage=103.386; evalue=1.5e-158; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070522 | ERCC4-ERCC1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000014 | single-stranded DNA endodeoxyribonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001094 | TFIID-class transcription factor complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003684 | damaged DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003697 | single-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004520 | DNA endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030674 | protein-macromolecule adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990599 | 3' overhang single-stranded DNA endodeoxyribonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990841 | promoter-specific chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G41150 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.673; coverage=103.704; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | maj:MAA_03851 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.106; coverage=103.492; evalue=2.94e-154 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:50505 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.324; coverage=102.751; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2538760 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.853; coverage=102.751; evalue=6.11e-148 | UniProtKB/Swiss-Prot DAT 2026 current_release |