Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA05G020370 |
|---|---|
| Query reference | TK1151 |
| Location | Chr05:5559813-5562948 (-) |
| Description | Similar to At3g54130: Ataxin-3 homolog (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_019121 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 49 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g54130 |
Interacts with key regulators of transcription and represses transcription. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0851400 |
Interacts with key regulators of transcription and represses transcription. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000226 | microtubule cytoskeleton organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002181 | cytoplasmic translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.075; coverage=89.037; evalue=2.17e-43; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006289 | nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.328; coverage=89.037; evalue=1.45e-43; UniProt GO evidence=IEA:GOC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.292; coverage=88.704; evalue=1.06e-114; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=ISS:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006515 | protein quality control for misfolded or incompletely synthesized proteins | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.292; coverage=88.704; evalue=1.06e-114; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009267 | cellular response to starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.075; coverage=89.037; evalue=2.17e-43; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010810 | regulation of cell-substrate adhesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016579 | protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.292; coverage=88.704; evalue=1.06e-114; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030036 | actin cytoskeleton organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031669 | cellular response to nutrient levels | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.075; coverage=89.037; evalue=2.17e-43; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034198 | cellular response to amino acid starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034605 | cellular response to heat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=ISS:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035520 | monoubiquitinated protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0038202 | TORC1 signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.075; coverage=89.037; evalue=2.17e-43; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.292; coverage=88.704; evalue=1.06e-114; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045104 | intermediate filament cytoskeleton organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045947 | negative regulation of translational initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.075; coverage=89.037; evalue=2.17e-43; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045948 | positive regulation of translational initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.075; coverage=89.037; evalue=2.17e-43; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070536 | protein K63-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071108 | protein K48-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071218 | cellular response to misfolded protein | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904262 | negative regulation of TORC1 signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.292; coverage=88.704; evalue=1.06e-114; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904263 | positive regulation of TORC1 signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.075; coverage=89.037; evalue=2.17e-43; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904294 | positive regulation of ERAD pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.292; coverage=88.704; evalue=1.06e-114; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904327 | protein localization to cytosolic proteasome complex | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IMP:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000060 | positive regulation of ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.292; coverage=88.704; evalue=1.06e-114; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.075; coverage=89.037; evalue=2.17e-43; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005759 | mitochondrial matrix | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=ISS:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005765 | lysosomal membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005789 | endoplasmic reticulum membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.328; coverage=89.037; evalue=1.45e-43; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.075; coverage=89.037; evalue=2.17e-43; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016363 | nuclear matrix | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031966 | mitochondrial membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=ISS:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042405 | nuclear inclusion body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=ISS:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.328; coverage=89.037; evalue=1.45e-43; UniProt GO evidence=IDA:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001222 | transcription corepressor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.328; coverage=89.037; evalue=1.45e-43; UniProt GO evidence=IPI:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004843 | cysteine-type deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.292; coverage=88.704; evalue=1.06e-114; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031625 | ubiquitin protein ligase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IPI:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042826 | histone deacetylase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.328; coverage=89.037; evalue=1.45e-43; UniProt GO evidence=IPI:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051117 | ATPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IPI:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061578 | K63-linked deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990380 | K48-linked deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G54130 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.292; coverage=88.704; evalue=1.06e-114 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0851400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.963; coverage=89.701; evalue=7.65e-108 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:4287 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.294; coverage=90.365; evalue=6.7e-44 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:110616 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.075; coverage=89.037; evalue=2.17e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:60331 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.328; coverage=89.037; evalue=1.45e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release |