Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA04G314550`
Query reference	TK1151
Location	Chr04:79267275-79269879 (+)
Description	Similar to FIE2: Polycomb group protein FIE1 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_037505 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 23 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g20740`	Polycomb group (PcG) protein.	Polycomb group genes control pattern formation in plant seed.2001 · DOI: 10.1016/s0960-9822(01)00072-0

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0137100`	Polycomb group (PcG) protein.	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis.2013 · DOI: 10.1371/journal.pgen.1003322 OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.2014 · DOI: 10.1111/nph.12472
`Os08g0137250`	Polycomb group (PcG) protein.	Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.2012 · DOI: 10.1105/tpc.112.102269 Imprinted gene OsFIE1 modulates rice seed development by influencing nutrient metabolism and modifying genome H3K27me3.2016 · DOI: 10.1111/tpj.13202

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000122	negative regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.655; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.655; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009910	negative regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009960	endosperm development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010048	vernalization response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010231	maintenance of seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031507	heterochromatin formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045815	transcription initiation-coupled chromatin remodeling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048316	seed development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.655; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090696	post-embryonic plant organ development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0141044	epigenetic programming in the endosperm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000014	regulation of endosperm development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005677	chromatin silencing complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031519	PcG protein complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035098	ESC/E(Z) complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043078	polar nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001222	transcription corepressor binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G20740	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os08g0137100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os08g0137250	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.655; coverage=100.27; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:9271694	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.655; coverage=100.27; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	zma:542075	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.463; coverage=98.108; evalue=2.04e-180	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	zma:542076	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.344; coverage=100.541; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release