Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA04G163040 |
|---|---|
| Query reference | TK1151 |
| Location | Chr04:42094963-42097825 (+) |
| Description | Similar to PABN2: Polyadenylate-binding protein 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_035153 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 26 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g51120 |
Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. | No verified direct reference in this release |
At5g65260 |
Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. | No verified direct reference in this release |
At5g10350 |
Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.299; coverage=86.222; evalue=8.7e-43; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.299; coverage=86.222; evalue=8.7e-43; UniProt GO evidence=IC:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=78.61; coverage=83.111; evalue=8.37e-101; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031124 | mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.299; coverage=86.222; evalue=8.7e-43; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033621 | nuclear mRNA surveillance of meiosis-specific transcripts | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0180010 | co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.299; coverage=86.222; evalue=8.7e-43; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.766; coverage=98.667; evalue=4.77e-98; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.231; coverage=98.222; evalue=1.04e-105; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.231; coverage=98.222; evalue=1.04e-105; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.299; coverage=86.222; evalue=8.7e-43; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.231; coverage=98.222; evalue=1.04e-105; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033620 | Mei2 nuclear dot complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071011 | precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.299; coverage=86.222; evalue=8.7e-43; UniProt GO evidence=HDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071013 | catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.299; coverage=86.222; evalue=8.7e-43; UniProt GO evidence=HDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071920 | cleavage body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140602 | nucleolar peripheral inclusion body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990251 | nuclear exosome focus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.299; coverage=86.222; evalue=8.7e-43; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.231; coverage=98.222; evalue=1.04e-105; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008143 | poly(A) binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.231; coverage=98.222; evalue=1.04e-105; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106222 | lncRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IPI:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140517 | protein-RNA adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45; UniProt GO evidence=IPI:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G10350 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.766; coverage=98.667; evalue=4.77e-98 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G51120 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=78.61; coverage=83.111; evalue=8.37e-101 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G65260 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.231; coverage=98.222; evalue=1.04e-105 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG2163 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.299; coverage=86.222; evalue=8.7e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2539733 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.861; coverage=64.0; evalue=3.36e-45 | UniProtKB/Swiss-Prot DAT 2026 current_release |