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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA04G135690
Query referenceTK1151
LocationChr04:35276506-35279709 (-)
DescriptionSimilar to SIGA: RNA polymerase sigma factor sigA (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035351 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 16 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g64860 Essential protein. No verified direct reference in this release
At5g13730 Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.
Specific function of a plastid sigma factor for ndhF gene transcription.2005 · DOI: 10.1093/nar/gki908

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0163400 Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released (Probable).
The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts.2007 · DOI: 10.1111/j.1365-313x.2007.03216.x

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006352DNA-templated transcription initiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006399tRNA metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.43; coverage=65.368; evalue=1.57e-46; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.43; coverage=65.368; evalue=1.57e-46; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010114response to red lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.43; coverage=65.368; evalue=1.57e-46; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071461cellular response to redox stateBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071482cellular response to light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080005photosystem stoichiometry adjustmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2001141regulation of RNA biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.561; coverage=65.152; evalue=5.98e-44; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1903865sigma factor antagonist complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.561; coverage=65.152; evalue=5.98e-44; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003899DNA-directed RNA polymerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016987sigma factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGana:all5263KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.766; coverage=66.667; evalue=4.63e-43UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G08540KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.43; coverage=65.368; evalue=1.57e-46UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G64860KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.754; coverage=109.091; evalue=1.18e-176UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os08g0163400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.79; coverage=88.528; evalue=2.62e-134UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4344738KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.79; coverage=88.528; evalue=2.62e-134UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsyf:Synpcc7942_0672KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.561; coverage=65.152; evalue=5.98e-44UniProtKB/Swiss-Prot DAT 2026 current_release