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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA04G028900
Query referenceTK1151
LocationChr04:7627140-7627916 (-)
DescriptionSimilar to ATG10: Ubiquitin-like-conjugating enzyme ATG10 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_036694 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 24 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g07525 E2-like enzyme involved in autophagy.
The ATG12-conjugating enzyme ATG10 Is essential for autophagic vesicle formation in Arabidopsis thaliana.2008 · DOI: 10.1534/genetics.107.086199
Autophagy differentially controls plant basal immunity to biotrophic and necrotrophic pathogens.2011 · DOI: 10.1111/j.1365-313x.2011.04546.x
ATG2, an autophagy-related protein, negatively affects powdery mildew resistance and mildew-induced cell death in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2011.04669.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000045autophagosome assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000423mitophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.062; coverage=59.259; evalue=5.99e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006497protein lipidationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.75; coverage=51.852; evalue=5.45e-25; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006914autophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006983ER overload responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.062; coverage=59.259; evalue=5.99e-26; UniProt GO evidence=IMP:BHF-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006995cellular response to nitrogen starvationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015031protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.062; coverage=59.259; evalue=5.99e-26; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031401positive regulation of protein modification processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.75; coverage=51.852; evalue=5.45e-25; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032446protein modification by small protein conjugationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.062; coverage=59.259; evalue=5.99e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042742defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043482cellular pigment accumulationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044804nucleophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050832defense response to fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061723glycophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090549response to carbon starvationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000786positive regulation of autophagosome assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000407phagophore assembly siteCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.062; coverage=59.259; evalue=5.99e-26; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004839ubiquitin activating enzyme activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019777Atg12 transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.062; coverage=59.259; evalue=5.99e-26; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019787ubiquitin-like protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061651Atg12 conjugating enzyme activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.062; coverage=59.259; evalue=5.99e-26; UniProt GO evidence=IDA:UniProtUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G07525KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.133; coverage=104.63; evalue=7.16e-62UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGddi:DDB_G0268840KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.516; coverage=57.407; evalue=3.66e-23UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:83734KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.062; coverage=59.259; evalue=5.99e-26UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:66795KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.75; coverage=51.852; evalue=5.45e-25UniProtKB/Swiss-Prot DAT 2026 current_release