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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA03G572920
Query referenceTK1151
LocationChr03:145305802-145306377 (+)
DescriptionSimilar to RAV1: AP2/ERF and B3 domain-containing transcription factor RAV1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_021401 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g68840 Probably acts as a transcriptional activator.
The balance between CONSTANS and TEMPRANILLO activities determines FT expression to trigger flowering.2008 · DOI: 10.1016/j.cub.2008.07.075
At1g13260 Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'.
Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as a negative regulator during plant development.2004 · DOI: 10.1038/sj.cr.7290197
RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants.1999 · DOI: 10.1093/nar/27.2.470
At1g25560 Transcriptional repressor of flowering time on long day plants.
The balance between CONSTANS and TEMPRANILLO activities determines FT expression to trigger flowering.2008 · DOI: 10.1016/j.cub.2008.07.075
At3g25730 Probably acts as a transcriptional activator. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0693400 AP2/ERF and B3 domain-containing protein Os01g0693400. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009741response to brassinosteroidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009873ethylene-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009910negative regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048366leaf developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048527lateral root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048573photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.933; coverage=102.388; evalue=2.8e-129; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071456cellular response to hypoxiaBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=HEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G13260KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.615; coverage=97.015; evalue=7.97e-137UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G25560KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.933; coverage=102.388; evalue=2.8e-129UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G68840KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.0; coverage=104.478; evalue=2.36e-128UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G25730KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.059; coverage=95.821; evalue=8.45e-124UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0693400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.154; coverage=97.015; evalue=1.84e-115UniProtKB/Swiss-Prot DAT 2026 current_release