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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA03G544190
Query referenceTK1151
LocationChr03:137229399-137233425 (+)
DescriptionSimilar to At4g06676: Protein EI24 homolog (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_024463 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 50 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g15900 Pleiotropic regulator of glucose, stress and hormone responses.
Regulatory interaction of PRL1 WD protein with Arabidopsis SNF1-like protein kinases.1999 · DOI: 10.1073/pnas.96.9.5322
SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase.2001 · DOI: 10.1093/emboj/20.11.2742
Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms.2007 · DOI: 10.1101/gad.1559607
Signaling from an altered cell wall to the nucleus mediates sugar-responsive growth and development in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.106.049965
Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.2008 · DOI: 10.1105/tpc.107.055418
Modulation of O-mediated retrograde signaling by the PLEIOTROPIC RESPONSE LOCUS 1 (PRL1) protein, a central integrator of stress and energy signaling.2009 · DOI: 10.1111/j.1365-313x.2009.03935.x
Pleiotropic regulatory locus 1 (PRL1) integrates the regulation of sugar responses with isoprenoid metabolism in Arabidopsis.2010 · DOI: 10.1093/mp/ssp100
Pleiotropic control of glucose and hormone responses by PRL1, a nuclear WD protein, in Arabidopsis.1998 · DOI: 10.1101/gad.12.19.3059
At3g16650 Pleiotropic regulator. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000398mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006396RNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006886intracellular protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006897endocytosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006955immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009734auxin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009749response to glucoseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009755hormone-mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010154fruit developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010182sugar mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010215cellulose microfibril organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016192vesicle-mediated transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016236macroautophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.2; coverage=35.211; evalue=4.48e-38; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031338regulation of vesicle fusionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032012regulation of ARF protein signal transductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034504protein localization to nucleusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042742defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045087innate immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048364root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048366leaf developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048825cotyledon developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050832defense response to fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900087positive regulation of G1/S transition of mitotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000012regulation of auxin polar transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000067regulation of root morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000974Prp19 complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001650fibrillar centerCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005662DNA replication factor A complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005681spliceosomal complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.2; coverage=35.211; evalue=4.48e-38; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005769early endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.2; coverage=35.211; evalue=4.48e-38; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005802trans-Golgi networkCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.2; coverage=35.211; evalue=4.48e-38; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031901early endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031965nuclear membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071006U2-type catalytic step 1 spliceosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071007U2-type catalytic step 2 spliceosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071013catalytic step 2 spliceosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071014post-mRNA release spliceosomal complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071018U12-type catalytic step 2 spliceosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071020post-spliceosomal complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080008Cul4-RING E3 ubiquitin ligase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005085guanyl-nucleotide exchange factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G16650KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.553; coverage=39.718; evalue=1.22e-27UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G43300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.322; coverage=24.507; evalue=2.19e-18UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G06676KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.2; coverage=35.211; evalue=4.48e-38UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G15900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.649; coverage=41.69; evalue=1.02e-31UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:53317KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.556; coverage=12.676; evalue=1.44e-14UniProtKB/Swiss-Prot DAT 2026 current_release