Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA03G418200 |
|---|---|
| Query reference | TK1151 |
| Location | Chr03:104081571-104083119 (+) |
| Description | Similar to UBC27: Ubiquitin-conjugating enzyme E2 27 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_009318 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 22 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g50870 |
Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000209 | protein polyubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.897; coverage=100.0; evalue=5.97e-115; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.897; coverage=100.0; evalue=5.97e-115; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010800 | positive regulation of peptidyl-threonine phosphorylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010994 | free ubiquitin chain polymerization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016050 | vesicle organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.575; coverage=89.691; evalue=1.49e-53; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032434 | regulation of proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035458 | cellular response to interferon-beta | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036503 | ERAD pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.333; coverage=74.227; evalue=1.37e-56; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060337 | type I interferon-mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060340 | positive regulation of type I interferon-mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070936 | protein K48-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903265 | positive regulation of tumor necrosis factor-mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.897; coverage=100.0; evalue=5.97e-115; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.333; coverage=74.227; evalue=1.37e-56; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032433 | filopodium tip | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.897; coverage=100.0; evalue=5.97e-115; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.897; coverage=100.0; evalue=5.97e-115; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031625 | ubiquitin protein ligase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034450 | ubiquitin-ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061631 | ubiquitin conjugating enzyme activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.897; coverage=100.0; evalue=5.97e-115; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070628 | proteasome binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.575; coverage=89.691; evalue=1.49e-53; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G50870 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.897; coverage=100.0; evalue=5.97e-115 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cel:CELE_C06E2.3 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.335; coverage=89.175; evalue=3.56e-62 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:53323 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.449; coverage=101.031; evalue=2.6e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YDR177W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.575; coverage=89.691; evalue=1.49e-53 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2540277 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.333; coverage=74.227; evalue=1.37e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release |