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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA03G388980
Query referenceTK1151
LocationChr03:96343583-96348669 (-)
DescriptionSimilar to EMF1: Protein EMBRYONIC FLOWER 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_008272 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 15 GO annotations and 1 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g11530 Transcription repressor that regulates phase transition during shoot, flower and seeds development.
Genetic interactions of the Arabidopsis flowering time gene FCA, with genes regulating floral initiation.1999 · DOI: 10.1046/j.1365-313x.1999.00364.x
EMF1, a novel protein involved in the control of shoot architecture and flowering in Arabidopsis.2001 · DOI: 10.1105/tpc.010094
EMF genes maintain vegetative development by repressing the flower program in Arabidopsis.2003 · DOI: 10.1105/tpc.007831
EMBRYONIC FLOWER1 participates in polycomb group-mediated AG gene silencing in Arabidopsis.2008 · DOI: 10.1105/tpc.106.049957
Epigenetic regulation of gene programs by EMF1 and EMF2 in Arabidopsis.2010 · DOI: 10.1104/pp.109.143495
Temporal and spatial requirement of EMF1 activity for Arabidopsis vegetative and reproductive development.2009 · DOI: 10.1093/mp/ssp004
EMBRYONIC FLOWER1 and ULTRAPETALA1 Act Antagonistically on Arabidopsis Development and Stress Response.2013 · DOI: 10.1104/pp.112.213223
Genetic regulation of shoot development in Arabidopsis: role of the EMF genes.1995 · DOI: 10.1006/dbio.1995.1158
EMF genes regulate Arabidopsis inflorescence development.1997 · DOI: 10.1105/tpc.9.11.2011
EMF genes interact with late-flowering genes to regulate Arabidopsis shoot development.1998 · DOI: 10.1093/oxfordjournals.pcp.a029381
FLD interacts with genes that affect different developmental phase transitions to regulate Arabidopsis shoot development.1998 · DOI: 10.1046/j.1365-313x.1998.00204.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009791post-embryonic developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009909regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009910negative regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010022meristem determinacyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0040029epigenetic regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042538hyperosmotic salinity responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045814negative regulation of gene expression, epigeneticBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045815transcription initiation-coupled chromatin remodelingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048367shoot system developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901000regulation of response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003690double-stranded DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003697single-stranded DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G11530KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07UniProtKB/Swiss-Prot DAT 2026 current_release