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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA03G380270
Query referenceTK1151
LocationChr03:93778863-93782449 (-)
DescriptionSimilar to VIP2: Protein PAF1 homolog (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_008372 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 21 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g79730 Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 'Lys-4' (H3K4me3).
PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization-responsive, winter-annual habit in Arabidopsis.2004 · DOI: 10.1101/gad.1244504
Identification of the Arabidopsis REDUCED DORMANCY 2 gene uncovers a role for the polymerase associated factor 1 complex in seed dormancy.2011 · DOI: 10.1371/journal.pone.0022241

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000122negative regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.274; coverage=53.165; evalue=3.94e-29; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000724double-strand break repair via homologous recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.955; coverage=69.62; evalue=1.66e-179; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006368transcription elongation by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.955; coverage=69.62; evalue=1.66e-179; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.955; coverage=69.62; evalue=1.66e-179; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009910negative regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.955; coverage=69.62; evalue=1.66e-179; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010467gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.274; coverage=53.165; evalue=6.54e-29; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016055Wnt signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.274; coverage=53.165; evalue=3.94e-29; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019827stem cell population maintenanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.274; coverage=53.165; evalue=4.97e-29; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031124mRNA 3'-end processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.274; coverage=53.165; evalue=3.94e-29; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034504protein localization to nucleusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.274; coverage=53.165; evalue=4.97e-29; UniProt GO evidence=IMP:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.274; coverage=53.165; evalue=4.97e-29; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071222cellular response to lipopolysaccharideBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.274; coverage=53.165; evalue=3.94e-29; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1902808positive regulation of cell cycle G1/S phase transitionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.274; coverage=53.165; evalue=3.94e-29; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001650fibrillar centerCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.274; coverage=53.165; evalue=4.97e-29; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.955; coverage=69.62; evalue=1.66e-179; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.274; coverage=53.165; evalue=4.97e-29; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.274; coverage=53.165; evalue=4.97e-29; UniProt GO evidence=IDA:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.274; coverage=53.165; evalue=4.97e-29; UniProt GO evidence=IDA:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016593Cdc73/Paf1 complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.955; coverage=69.62; evalue=1.66e-179; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000993RNA polymerase II complex bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.955; coverage=69.62; evalue=1.66e-179; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.955; coverage=69.62; evalue=1.66e-179; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G79730KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.955; coverage=69.62; evalue=1.66e-179UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:54623KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.274; coverage=53.165; evalue=4.97e-29UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:54624KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.274; coverage=53.165; evalue=6.54e-29UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpon:100172552KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.274; coverage=53.165; evalue=3.94e-29UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrno:361531KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.274; coverage=53.165; evalue=6.6e-29UniProtKB/Swiss-Prot DAT 2026 current_release