Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA03G238660 |
|---|---|
| Query reference | TK1151 |
| Location | Chr03:59359485-59378073 (-) |
| Description | Similar to BIG: Auxin transport protein BIG (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_007906 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 24 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g02260 |
Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development). |
BIG: a calossin-like protein required for polar auxin transport in Arabidopsis.2001 · DOI: 10.1101/gad.905201 Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses.2003 · DOI: 10.1046/j.1365-313x.2003.01779.x The auxin transport inhibitor response 3 (tir3) allele of BIG and auxin transport inhibitors affect the gibberellin status of Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2004.02287.x CRM1/BIG-mediated auxin action regulates Arabidopsis inflorescence development.2007 · DOI: 10.1093/pcp/pcm094
|
At3g01120 |
Catalyzes the first committed step of methionine (Met) biosynthesis. | No verified direct reference in this release |
At1g33320 |
Catalyzes the first committed step of methionine (Met) biosynthesis. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os09g0247700 |
Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development) (By similarity). | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001887 | selenium compound metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.632; coverage=7.371; evalue=8.96e-31; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009086 | methionine biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.263; coverage=7.371; evalue=3.63e-31; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009620 | response to fungus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009640 | photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009733 | response to auxin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009734 | auxin-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009826 | unidimensional cell growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009926 | auxin polar transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010311 | lateral root formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019346 | transsulfuration | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.263; coverage=7.371; evalue=3.63e-31; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048281 | inflorescence morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048364 | root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071596 | ubiquitin-dependent protein catabolic process via the N-end rule pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140455 | cytoplasm protein quality control | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.263; coverage=7.371; evalue=3.63e-31; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.632; coverage=7.371; evalue=8.96e-31; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003962 | cystathionine gamma-synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.263; coverage=7.371; evalue=3.63e-31; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030170 | pyridoxal phosphate binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.263; coverage=7.371; evalue=3.63e-31; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G01120 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.632; coverage=7.371; evalue=8.96e-31 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G02260 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.748; coverage=23.86; evalue=7.13e-37 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | nta:107822634 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.263; coverage=7.371; evalue=3.63e-31 | UniProtKB/Swiss-Prot DAT 2026 current_release |