Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA03G117770`
Query reference	TK1151
Location	Chr03:30102749-30103275 (+)
Description	Similar to AGL31: Agamous-like MADS-box protein AGL31 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_007133 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 21 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10140`	Putative transcription factor that seems to play a central role in the regulation of flowering time in the late-flowering phenotype by interacting with 'FRIGIDA', the autonomous and the vernalization flowering pathways.	No verified direct reference in this release
`At5g13790`	Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway.	The MADS-domain protein AGAMOUS-like 15 accumulates in embryonic tissues with diverse origins.1999 · DOI: 10.1104/pp.120.1.121 The embryo MADS domain factor AGL15 acts postembryonically. Inhibition of perianth senescence and abscission via constitutive expression.2000 · DOI: 10.1105/tpc.12.2.183 Effect of regulated overexpression of the MADS domain factor AGL15 on flower senescence and fruit maturation.2002 · DOI: 10.1104/pp.004721 Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.2003 · DOI: 10.1074/jbc.m212976200 The embryo MADS domain protein AGAMOUS-Like 15 directly regulates expression of a gene encoding an enzyme involved in gibberellin metabolism.2004 · DOI: 10.1105/tpc.021261 Control of expression and autoregulation of AGL15, a member of the MADS-box family.2005 · DOI: 10.1111/j.1365-313x.2004.02320.x The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03105.x The MADS-domain transcriptional regulator AGAMOUS-LIKE15 promotes somatic embryo development in Arabidopsis and soybean.2008 · DOI: 10.1104/pp.108.115832 Arabidopsis cold shock domain proteins: relationships to floral and silique development.2009 · DOI: 10.1093/jxb/ern351 Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15.2009 · DOI: 10.1105/tpc.109.068890 The MADS domain protein AGL15 localizes to the nucleus during early stages of seed development.1996 · DOI: 10.1105/tpc.8.11.1977
`At1g77080`	Probable transcription factor involved in the negative regulation of flowering time in both long and short days, probably through the photoperiodic and vernalization pathways.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0883100`	Probable transcription factor involved in the development of floral organs.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009266	response to temperature stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.651; coverage=62.083; evalue=3.07e-29; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009910	negative regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010048	vernalization response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010221	negative regulation of vernalization response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042752	regulation of circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.651; coverage=62.083; evalue=3.07e-29; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048440	carpel development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.773; coverage=73.333; evalue=1.75e-27; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000028	regulation of photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.442; coverage=71.667; evalue=1.5e-29; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032991	protein-containing complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.651; coverage=62.083; evalue=3.07e-29; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.651; coverage=62.083; evalue=3.07e-29; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.764; coverage=74.167; evalue=4.39e-29; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G10140	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.651; coverage=62.083; evalue=3.07e-29	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G65050	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.186; coverage=71.667; evalue=1.68e-30	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G65060	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.442; coverage=71.667; evalue=1.5e-29	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	vvi:100232867	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.773; coverage=73.333; evalue=1.75e-27	UniProtKB/Swiss-Prot DAT 2026 current_release