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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA03G042580
Query referenceTK1151
LocationChr03:11203634-11208943 (+)
DescriptionSimilar to At2g35920: DExH-box ATP-dependent RNA helicase DExH1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005268 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g35920 DExH-box ATP-dependent RNA helicase DExH1. No verified direct reference in this release
At3g05040 Nucleocytoplasmic transporter involved in the nuclear export of microRNAs (miRNAs).
HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis.2003 · DOI: 10.1242/dev.00362
Nuclear processing and export of microRNAs in Arabidopsis.2005 · DOI: 10.1073/pnas.0405570102
Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3.2006 · DOI: 10.1242/dev.02521
At1g48650 DExH-box ATP-dependent RNA helicase DExH3. No verified direct reference in this release
At2g01130 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009932cell tip growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=22.868; evalue=1.16e-40; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010053root epidermal cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=22.868; evalue=1.16e-40; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010215cellulose microfibril organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048765root hair cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=22.868; evalue=1.16e-40; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048768root hair cell tip growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=22.868; evalue=1.16e-40; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0052324plant-type cell wall cellulose biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.964; coverage=40.29; evalue=2.05e-77; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.256; coverage=39.02; evalue=1.08e-44; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005768endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005794Golgi apparatusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005802trans-Golgi networkCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.964; coverage=40.29; evalue=2.05e-77; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009504cell plateCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0098552side of membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.964; coverage=40.29; evalue=2.05e-77; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003724RNA helicase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.964; coverage=40.29; evalue=2.05e-77; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.964; coverage=40.29; evalue=2.05e-77; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004386helicase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.964; coverage=40.29; evalue=2.05e-77; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.964; coverage=40.29; evalue=2.05e-77; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016887ATP hydrolysis activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.964; coverage=40.29; evalue=2.05e-77; UniProt GO evidence=IEA:RHEAUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G48650KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.891; coverage=40.109; evalue=8.19e-45UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G01130KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.256; coverage=39.02; evalue=1.08e-44UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G35920KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.964; coverage=40.29; evalue=2.05e-77UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G16120KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=58.594; coverage=23.23; evalue=2.9e-42UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G49270KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=22.868; evalue=1.16e-40UniProtKB/Swiss-Prot DAT 2026 current_release