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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA02G569110
Query referenceTK1151
LocationChr02:147000952-147003400 (+)
DescriptionSimilar to SDIR1: E3 ubiquitin-protein ligase SDIR1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_014581 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 27 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g55530 E3 ubiquitin-protein ligase that acts as a positive regulator of abscisic acid-related stress signal transduction.
SDIR1 is a RING finger E3 ligase that positively regulates stress-responsive abscisic acid signaling in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048488
Arabidopsis SDIR1 enhances drought tolerance in crop plants.2008 · DOI: 10.1271/bbb.80286
The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis.2015 · DOI: 10.1105/tpc.114.134163

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0488800 Possesses E3 ubiqutin-protein ligase activity in vitro.
Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.2016 · DOI: 10.1111/ppl.12459

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000578embryonic axis specificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.366; coverage=11.549; evalue=4.64e-11; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.585; coverage=11.549; evalue=1.04e-11; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006511ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.284; coverage=9.437; evalue=1.87e-11; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009651response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009788negative regulation of abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.284; coverage=9.437; evalue=1.87e-11; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009789positive regulation of abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010182sugar mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.529; coverage=9.577; evalue=6.77e-12; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.585; coverage=11.549; evalue=1.04e-11; UniProt GO evidence=NAS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.585; coverage=11.549; evalue=1.04e-11; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.529; coverage=9.577; evalue=6.77e-12; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005789endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.585; coverage=11.549; evalue=1.04e-11; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.284; coverage=9.437; evalue=1.87e-11; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.529; coverage=9.577; evalue=6.77e-12; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0017053transcription repressor complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.585; coverage=11.549; evalue=1.04e-11; UniProt GO evidence=NAS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001221transcription coregulator bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.366; coverage=11.549; evalue=4.64e-11; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003714transcription corepressor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.585; coverage=11.549; evalue=1.04e-11; UniProt GO evidence=NAS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.366; coverage=11.549; evalue=4.64e-11; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140297DNA-binding transcription factor bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.366; coverage=11.549; evalue=4.64e-11; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G47990KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.529; coverage=9.577; evalue=6.77e-12UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G55530KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.975; coverage=16.761; evalue=3.35e-16UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G66070KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.284; coverage=9.437; evalue=1.87e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:51132KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.585; coverage=11.549; evalue=1.04e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:398680KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.366; coverage=11.549; evalue=4.64e-11UniProtKB/Swiss-Prot DAT 2026 current_release