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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA02G502010
Query referenceTK1151
LocationChr02:128659231-128662480 (-)
DescriptionSimilar to RBM25: RNA-binding protein 25 (Homo sapiens OX%3D9606)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_011569 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 17 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g60200 RNA-binding protein that acts as a regulator of alternative pre-mRNA splicing.
An Arabidopsis PWI and RRM motif-containing protein is critical for pre-mRNA splicing and ABA responses.2015 · DOI: 10.1038/ncomms9139
A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a.2017 · DOI: 10.1534/genetics.117.300149

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000381regulation of alternative mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.189; coverage=24.195; evalue=5.04e-28; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000395mRNA 5'-splice site recognitionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.0; coverage=10.384; evalue=1.71e-08; UniProt GO evidence=IC:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.196; coverage=80.582; evalue=3.71e-157; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008380RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.196; coverage=80.582; evalue=3.71e-157; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.196; coverage=80.582; evalue=3.71e-157; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.196; coverage=80.582; evalue=3.71e-157; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.196; coverage=80.582; evalue=3.71e-157; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048024regulation of mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.196; coverage=80.582; evalue=3.71e-157; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.196; coverage=80.582; evalue=3.71e-157; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.189; coverage=24.195; evalue=5.04e-28; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005685U1 snRNPCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.0; coverage=10.384; evalue=1.71e-08; UniProt GO evidence=IDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.189; coverage=24.195; evalue=5.04e-28; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.0; coverage=10.384; evalue=1.71e-08; UniProt GO evidence=HDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.189; coverage=24.195; evalue=5.04e-28; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071004U2-type prespliceosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.0; coverage=10.384; evalue=1.71e-08; UniProt GO evidence=ISO:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.196; coverage=80.582; evalue=3.71e-157; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.189; coverage=24.195; evalue=5.04e-28; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G60200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.196; coverage=80.582; evalue=3.71e-157UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:58517KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.189; coverage=24.195; evalue=5.04e-28UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:67039KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.189; coverage=24.195; evalue=5.34e-28UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGspo:2541211KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.0; coverage=10.384; evalue=1.71e-08UniProtKB/Swiss-Prot DAT 2026 current_release