Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA02G480560`
Query reference	TK1151
Location	Chr02:122608513-122611101 (-)
Description	Similar to TPC1: Two pore calcium channel protein 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013660 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 17 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g22770`	Transcription activator that regulates the expression of at least NAI2, PYK10 and PBP1.	A novel ER-derived compartment, the ER body, selectively accumulates a beta-glucosidase with an ER-retention signal in Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01636.x NAI1 gene encodes a basic-helix-loop-helix-type putative transcription factor that regulates the formation of an endoplasmic reticulum-derived structure, the ER body.2004 · DOI: 10.1105/tpc.021154 Activation of an ER-body-localized beta-glucosidase via a cytosolic binding partner in damaged tissues of Arabidopsis thaliana.2005 · DOI: 10.1093/pcp/pci126 PYK10, a beta-glucosidase located in the endoplasmatic reticulum, is crucial for the beneficial interaction between Arabidopsis thaliana and the endophytic fungus Piriformospora indica.2008 · DOI: 10.1111/j.1365-313x.2008.03424.x Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thaliana.2008 · DOI: 10.1093/pcp/pcn075 NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana.2008 · DOI: 10.1105/tpc.108.059345
`At4g37850`	Transcription factor bHLH25.	No verified direct reference in this release
`At2g22760`	Transcription factor bHLH19.	No verified direct reference in this release
`At2g22750`	Transcription factor bHLH18.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006816	calcium ion transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.522; coverage=39.316; evalue=7.03e-50; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009845	seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019722	calcium-mediated signaling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080141	regulation of jasmonic acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000325	plant-type vacuole	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005773	vacuole	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005774	vacuolar membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034702	monoatomic ion channel complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005245	voltage-gated calcium channel activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005262	calcium channel activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005509	calcium ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G03560	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0678500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.696; coverage=38.675; evalue=1.95e-40	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	nta:107770546	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.522; coverage=39.316; evalue=7.03e-50	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	nta:107819477	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.435; coverage=39.316; evalue=6.05e-48	UniProtKB/Swiss-Prot DAT 2026 current_release