Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA02G298400`
Query reference	TK1151
Location	Chr02:76032243-76035130 (+)
Description	Similar to SGR5: Zinc finger protein SHOOT GRAVITROPISM 5 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022467 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 26 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68130`	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS.	Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism.2011 · DOI: 10.1038/ncomms1303 The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport.2013 · DOI: 10.1371/journal.pgen.1003759
`At2g01940`	Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells.	A C2H2-type zinc finger protein, SGR5, is involved in early events of gravitropism in Arabidopsis inflorescence stems.2006 · DOI: 10.1111/j.1365-313x.2006.02807.x Altered gravitropic response, amyloplast sedimentation and circumnutation in the Arabidopsis shoot gravitropism 5 mutant are associated with reduced starch levels.2008 · DOI: 10.1007/s11103-008-9301-0 The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport.2013 · DOI: 10.1371/journal.pgen.1003759 Mutations in the SGR4, SGR5 and SGR6 loci of Arabidopsis thaliana alter the shoot gravitropism.1997 · DOI: 10.1093/oxfordjournals.pcp.a029201
`At1g25250`	Transcription factor regulating lateral organ morphogenesis and gravitropic responses.	The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport.2013 · DOI: 10.1371/journal.pgen.1003759
`At3g50700`	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling.	No verified direct reference in this release
`At1g03840`	Transcription factor that regulates tissue boundaries and asymmetric cell division.	DELLA protein functions as a transcriptional activator through the DNA binding of the indeterminate domain family proteins.2014 · DOI: 10.1073/pnas.1321669111

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0002221	pattern recognition receptor signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.615; coverage=47.342; evalue=1.51e-70; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008356	asymmetric cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.615; coverage=47.342; evalue=1.51e-70; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009590	detection of gravity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009630	gravitropism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009740	gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.963; coverage=41.266; evalue=3.23e-69; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009937	regulation of gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.963; coverage=41.266; evalue=3.23e-69; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009959	negative gravitropism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009965	leaf morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010031	circumnutation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010336	gibberellic acid homeostasis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.963; coverage=41.266; evalue=3.23e-69; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010601	positive regulation of auxin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.615; coverage=47.342; evalue=1.51e-70; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.615; coverage=47.342; evalue=1.51e-70; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048444	floral organ morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000012	regulation of auxin polar transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000122	negative regulation of stomatal complex development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.496; coverage=90.886; evalue=3.17e-133; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000904	regulation of starch metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.615; coverage=47.342; evalue=1.51e-70; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.158; coverage=96.203; evalue=7.27e-143; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.496; coverage=90.886; evalue=3.17e-133; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G25250	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.496; coverage=90.886; evalue=3.17e-133	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G68130	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.158; coverage=96.203; evalue=7.27e-143	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G01940	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.663; coverage=102.278; evalue=3.15e-153	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G02080	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.615; coverage=47.342; evalue=1.51e-70	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G50700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=61.963; coverage=41.266; evalue=3.23e-69	UniProtKB/Swiss-Prot DAT 2026 current_release