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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA01G410650
Query referenceTK1151
LocationChr01:102440079-102444830 (-)
DescriptionSimilar to DET1: Light-mediated development protein DET1 (Solanum lycopersicum OX%3D4081)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_003004 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 14 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g10180 Component of light signal transduction machinery.
Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes.2004 · DOI: 10.1101/gad.1229504
DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis.2018 · DOI: 10.7554/elife.37892
DET1 represses a chloroplast blue light-responsive promoter in a developmental and tissue-specific manner in Arabidopsis thaliana.1998 · DOI: 10.1046/j.1365-313x.1998.00078.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0005975carbohydrate metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.681; coverage=100.547; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.189; coverage=101.277; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009585red, far-red light phototransductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.681; coverage=100.547; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.681; coverage=100.547; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032436positive regulation of proteasomal ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.681; coverage=100.547; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0065003protein-containing complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.526; coverage=104.015; evalue=1.19e-72; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.681; coverage=100.547; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.189; coverage=101.277; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031461cullin-RING ubiquitin ligase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.681; coverage=100.547; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031464Cul4A-RING E3 ubiquitin ligase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.526; coverage=104.015; evalue=1.19e-72; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080008Cul4-RING E3 ubiquitin ligase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.526; coverage=104.015; evalue=1.19e-72; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031625ubiquitin protein ligase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.681; coverage=100.547; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044877protein-containing complex bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.526; coverage=104.015; evalue=1.19e-72; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990756ubiquitin-like ligase-substrate adaptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.681; coverage=100.547; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G10180KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.189; coverage=101.277; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:55070KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.526; coverage=104.015; evalue=1.84e-72UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:76375KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.526; coverage=104.015; evalue=1.19e-72UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsly:778329KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.681; coverage=100.547; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release