Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA01G215060 |
|---|---|
| Query reference | TK1151 |
| Location | Chr01:54797888-54801230 (+) |
| Description | Similar to UBP2: Ubiquitin carboxyl-terminal hydrolase 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_004009 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 26 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g04860 |
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. | |
At2g32780 |
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.257; coverage=45.465; evalue=4.48e-86; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.748; coverage=60.979; evalue=2.91e-100; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016579 | protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.748; coverage=60.979; evalue=2.91e-100; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031647 | regulation of protein stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.748; coverage=60.979; evalue=2.91e-100; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035520 | monoubiquitinated protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051289 | protein homotetramerization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051726 | regulation of cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090070 | positive regulation of ribosome biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140014 | mitotic nuclear division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000502 | proteasome complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.748; coverage=60.979; evalue=2.91e-100; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.748; coverage=60.979; evalue=2.91e-100; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.748; coverage=60.979; evalue=2.91e-100; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004197 | cysteine-type endopeptidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004843 | cysteine-type deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.748; coverage=60.979; evalue=2.91e-100; UniProt GO evidence=IMP:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.748; coverage=60.979; evalue=2.91e-100; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042393 | histone binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043024 | ribosomal small subunit binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043130 | ubiquitin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140950 | histone H2A deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G04860 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=38.748; coverage=60.979; evalue=2.91e-100 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G32780 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.257; coverage=45.465; evalue=4.48e-86 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:519992 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.221; coverage=48.568; evalue=2.49e-35 | UniProtKB/Swiss-Prot DAT 2026 current_release |