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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA01G024290
Query referenceTK1151
LocationChr01:6246360-6252882 (+)
DescriptionSimilar to PHF3: PHD finger protein 3 (Homo sapiens OX%3D9606)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005669 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g38560 Necessary for efficient RNA polymerase II transcription elongation past template-encoded arresting sites (Probable).
Transcript elongation factor TFIIS is involved in arabidopsis seed dormancy.2009 · DOI: 10.1016/j.jmb.2008.12.066
Identification of the Arabidopsis REDUCED DORMANCY 2 gene uncovers a role for the polymerase associated factor 1 complex in seed dormancy.2011 · DOI: 10.1371/journal.pone.0022241

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.018; coverage=12.812; evalue=4.36e-19; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006368transcription elongation by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.836; coverage=8.277; evalue=1e-10; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007283spermatogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.594; coverage=15.079; evalue=2.3e-11; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030154cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.594; coverage=15.079; evalue=2.3e-11; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0141006transposable element silencing by piRNA-mediated heterochromatin formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.594; coverage=15.079; evalue=2.3e-11; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0141196transposable element silencing by piRNA-mediated DNA methylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.594; coverage=15.079; evalue=2.3e-11; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.018; coverage=12.812; evalue=4.36e-19; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.882; coverage=9.637; evalue=7.21e-12; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005694chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.594; coverage=15.079; evalue=2.3e-11; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.882; coverage=9.637; evalue=7.21e-12; UniProt GO evidence=TAS:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005819spindleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.882; coverage=9.637; evalue=7.21e-12; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.836; coverage=8.277; evalue=1e-10; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003711transcription elongation factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.836; coverage=8.277; evalue=1e-10; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.186; coverage=9.751; evalue=1.14e-11; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.018; coverage=12.812; evalue=4.36e-19; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030674protein-macromolecule adaptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.594; coverage=15.079; evalue=2.3e-11; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcel:CELE_T24H10.1KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.836; coverage=8.277; evalue=1e-10UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:11083KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.186; coverage=9.751; evalue=1.14e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:23469KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.018; coverage=12.812; evalue=4.36e-19UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:90853KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.594; coverage=15.079; evalue=2.3e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:23856KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.882; coverage=9.637; evalue=7.21e-12UniProtKB/Swiss-Prot DAT 2026 current_release