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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_039068
Query referenceOH1004
LocationChr09:58415889-58423742 (+)
DescriptionSimilar to GUX4: Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_039068 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g54940 May be involved in the substitutions of the xylan backbone in stem glucuronoxylan. No verified direct reference in this release
At1g08990 May be involved in the substitutions of the xylan backbone in stem glucuronoxylan. No verified direct reference in this release
UniProt: Q8GWW4 Glycosyltransferase required for the addition of both glucuronic acid and 4-O-methylglucuronic acid branches to xylan in stem cell walls. No verified direct reference in this release
At1g77130 May be involved in the substitutions of the xylan backbone in stem glucuronoxylan. No verified direct reference in this release
At3g18660 Glycosyltransferase required for the addition of both glucuronic acid and 4-O-methylglucuronic acid branches to xylan in stem cell walls.
Absence of branches from xylan in Arabidopsis gux mutants reveals potential for simplification of lignocellulosic biomass.2010 · DOI: 10.1073/pnas.1005456107
An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development.2010 · DOI: 10.1371/journal.pone.0015481

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009834plant-type secondary cell wall biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.062; coverage=96.811; evalue=1.93e-157; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010417glucuronoxylan biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.062; coverage=96.811; evalue=1.93e-157; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045492xylan biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.964; coverage=105.066; evalue=3.89e-173; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071555cell wall organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.964; coverage=105.066; evalue=3.89e-173; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000138Golgi trans cisternaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.887; coverage=90.994; evalue=3.73e-130; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000139Golgi membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.964; coverage=105.066; evalue=3.89e-173; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.903; coverage=92.683; evalue=1.56e-128; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.887; coverage=90.994; evalue=3.73e-130; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005768endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.887; coverage=90.994; evalue=3.73e-130; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005794Golgi apparatusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.964; coverage=105.066; evalue=3.89e-173; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005802trans-Golgi networkCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.887; coverage=90.994; evalue=3.73e-130; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015020glucuronosyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.964; coverage=105.066; evalue=3.89e-173; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016757glycosyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.062; coverage=96.811; evalue=1.93e-157; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.964; coverage=105.066; evalue=3.89e-173; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080116glucuronoxylan glucuronosyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.964; coverage=105.066; evalue=3.89e-173; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G08990KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.405; coverage=94.559; evalue=5.74e-167UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G54940KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.964; coverage=105.066; evalue=3.89e-173UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G77130KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.887; coverage=90.994; evalue=3.73e-130UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G18660KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.903; coverage=92.683; evalue=1.56e-128UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G33330KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.062; coverage=96.811; evalue=1.93e-157UniProtKB/Swiss-Prot DAT 2026 current_release