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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_038616
Query referenceOH1004
LocationChr09:45625868-45626655 (-)
DescriptionSimilar to MYB119: Transcription factor MYB119 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038616 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 29 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g58850 Transcription factor required for female gametophyte fertility.
MYB64 and MYB119 are required for cellularization and differentiation during female gametogenesis in Arabidopsis thaliana.2013 · DOI: 10.1371/journal.pgen.1003783
At4g18770 Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules.
MYB98 is required for pollen tube guidance and synergid cell differentiation in Arabidopsis.2005 · DOI: 10.1105/tpc.105.034603
Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins.2007 · DOI: 10.1371/journal.pgen.0030171
Cytoplasmic Ca2+ changes dynamically during the interaction of the pollen tube with synergid cells.2012 · DOI: 10.1242/dev.081208
At5g11050 Transcription factor required for female gametophyte fertility.
MYB64 and MYB119 are required for cellularization and differentiation during female gametogenesis in Arabidopsis thaliana.2013 · DOI: 10.1371/journal.pgen.1003783
At3g27785 Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes.
Overexpression of PGA37/MYB118 and MYB115 promotes vegetative-to-embryonic transition in Arabidopsis.2009 · DOI: 10.1038/cr.2008.276
Involvement of an R2R3-MYB transcription factor gene AtMYB118 in embryogenesis in Arabidopsis.2009 · DOI: 10.1007/s00299-008-0644-4
MYB118 represses endosperm maturation in seeds of Arabidopsis.2014 · DOI: 10.1105/tpc.114.130021
Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.2016 · DOI: 10.1105/tpc.16.00612

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000278mitotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.847; coverage=31.053; evalue=6.75e-11; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.583; coverage=85.789; evalue=8.56e-15; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.583; coverage=85.789; evalue=8.56e-15; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009553embryo sac developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.098; coverage=32.105; evalue=1.53e-13; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009960endosperm developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010183pollen tube guidanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.098; coverage=32.105; evalue=1.53e-13; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010228vegetative to reproductive phase transition of meristemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010262somatic embryogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010439regulation of glucosinolate biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045691regulation of embryo sac central cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.098; coverage=32.105; evalue=1.53e-13; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045697regulation of synergid differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.098; coverage=32.105; evalue=1.53e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045723positive regulation of fatty acid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.847; coverage=31.053; evalue=6.75e-11; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045995regulation of embryonic developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051302regulation of cell divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.548; coverage=81.579; evalue=1.57e-13; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0055089fatty acid homeostasisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904095negative regulation of endosperm developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000014regulation of endosperm developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000034regulation of seed maturationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000692negative regulation of seed maturationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2001280positive regulation of unsaturated fatty acid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.583; coverage=85.789; evalue=8.56e-15; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.098; coverage=32.105; evalue=1.53e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000978RNA polymerase II cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.583; coverage=85.789; evalue=8.56e-15; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000981DNA-binding transcription factor activity, RNA polymerase II-specificMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.583; coverage=85.789; evalue=8.56e-15; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.098; coverage=32.105; evalue=1.53e-13; UniProt GO evidence=TAS:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.583; coverage=85.789; evalue=8.56e-15; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043565sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.098; coverage=32.105; evalue=1.53e-13; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G27785KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.872; coverage=41.053; evalue=3.77e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G18770KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=54.098; coverage=32.105; evalue=1.53e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G11050KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.548; coverage=81.579; evalue=1.57e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G58850KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.583; coverage=85.789; evalue=8.56e-15UniProtKB/Swiss-Prot DAT 2026 current_release