Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_037813`
Query reference	OH1004
Location	Chr09:21908392-21909334 (+)
Description	Similar to MSRB1: Peptide methionine sulfoxide reductase B1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_037813 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 8 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g53670`	Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins.	The Arabidopsis plastidic methionine sulfoxide reductase B proteins. Sequence and activity characteristics, comparison of the expression with plastidic methionine sulfoxide reductase A, and induction by photooxidative stress.2005 · DOI: 10.1104/pp.105.062430 Specificity of thioredoxins and glutaredoxins as electron donors to two distinct classes of Arabidopsis plastidial methionine sulfoxide reductases B.2007 · DOI: 10.1016/j.febslet.2007.07.081 Regeneration mechanisms of Arabidopsis thaliana methionine sulfoxide reductases B by glutaredoxins and thioredoxins.2009 · DOI: 10.1074/jbc.m109.015487 Arabidopsis thaliana plastidial methionine sulfoxide reductases B, MSRBs, account for most leaf peptide MSR activity and are essential for growth under environmental constraints through a role in the preservation of photosystem antennae.2010 · DOI: 10.1111/j.1365-313x.2009.04053.x Plant thioredoxin CDSP32 regenerates 1-cys methionine sulfoxide reductase B activity through the direct reduction of sulfenic acid.2010 · DOI: 10.1074/jbc.m110.108373

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0472000`	Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins.	OsMSRA4.1 and OsMSRB1.1, two rice plastidial methionine sulfoxide reductases, are involved in abiotic stress responses.2009 · DOI: 10.1007/s00425-009-0934-2

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006979	response to oxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.295; coverage=70.202; evalue=1.51e-86; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030091	protein repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.295; coverage=70.202; evalue=1.51e-86; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.295; coverage=70.202; evalue=1.51e-86; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.295; coverage=70.202; evalue=1.51e-86; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.295; coverage=70.202; evalue=1.51e-86; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.0; coverage=63.131; evalue=2.28e-57; UniProt GO evidence=IEA:UniProtKB-UniRule	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.295; coverage=70.202; evalue=1.51e-86; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.295; coverage=70.202; evalue=1.51e-86; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	amr:AM1_2115	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=61.069; coverage=66.162; evalue=6.23e-54	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G53670	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.295; coverage=70.202; evalue=1.51e-86	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	avn:Avin_15440	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.692; coverage=65.657; evalue=1.49e-52	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0472000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=82.114; coverage=62.121; evalue=1.19e-79	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	tel:tlr1214	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.0; coverage=63.131; evalue=2.28e-57	UniProtKB/Swiss-Prot DAT 2026 current_release