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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_035709
Query referenceOH1004
LocationChr08:27523548-27528930 (+)
DescriptionSimilar to CERBERUS: Putative E3 ubiquitin-protein ligase LIN-1 (Lotus japonicus OX%3D34305)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035709 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0570000 E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance.
Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity.2004 · DOI: 10.1105/tpc.104.025171
SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice.2008 · DOI: 10.1105/tpc.108.058610
UniProt: A2ZLU6 Defense related protein that negatively regulates programmed cell death. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007166cell surface receptor signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009877nodulationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.344; coverage=102.743; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.344; coverage=102.743; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031348negative regulation of defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043069negative regulation of programmed cell deathBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048586regulation of long-day photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000028regulation of photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.344; coverage=102.743; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os12g0570000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.161; coverage=6.379; evalue=3.58e-15UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmtr:11418360KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.932; coverage=102.401; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release